| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1014 |
|---|
| Symbol | |
|---|
| ID | 8252108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1185038 |
|---|
| End bp | 1186063 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644934668 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_003091297 |
|---|
| Protein GI | 255530925 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.220407 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAC AGCAGGTAAC AATTAAAGAT ATAGCTTTGG AAGTAGGAAT GTCGACTTCT
ACTGTCTCCA GGGCCCTTAG TGATCATGAG CATATTAGTG AAGAGACTAA AGCAAGAGTT
AATGAGGCCG TACAAAAGCT TGGTTACCGG TATAACGCAC TGGCAGCTGC TTTAAGGAAC
AGCAAATCCA ATACCATTGG TTTGATAGTA CCCAGGATTT CCATGTTTTT TCAGGCTGCT
GTTATTACTG CAATTCAGAA TACCCTTCAT AAATATGGTT ACAGTGTAAT TATCTGTCAG
TCTAATGAAG ATCCTGAACA GGAAAAGAAG CTGGTTAGTT TGTTGCATGC TTCAAGAGTA
GAAGGAATAA TCGTATCCTG TAGTATAAAG ACTGAAGATT TTTCACATTT TGACGATTCG
GTAGGGAGTG AAATCCCGAT CATTTTTTAT GATCGTGTAC CTAACAATTA TCCTGCTCAT
AAGATAAAAG GGGACGAGTA TCATGGGGCT TATCTATCAA CAGTGCACCT GATAGAGCAG
GGTTGCAAAC ATATCGCGCA CATCGGAGGG CCACTTTCCT GTAACCAGTA CCAGGAACGC
TTTGATGGTT ATAAGGATGC TTTAAAAAAG CATAATATGC CATTTGATAG TTCTATGACG
TTTTTTCATG AGTTGAACAA AGAGAATGCA ATGAATACCT GTGACTTGAT ATTTAAGCGA
GACCAGGTTC CGGATGGTAT ATTTGCAAGT AATGATACCA CGGCGCTTGC CATCATAGAA
TTTGCTAAAA AAAATAACCT GGCCATACCT GGAGCATTGA AAATTGTCGG TTATTCCAAT
GACAACCGGA CTGATATATC TTATCCGACA GTAACTTCGG TAGAACAGTT TCCTCATGAA
ATGGGAGAAC AGGCTGCCAA CCTGATGATG GACCTTATCC AGAAAAGAGT GAACCCTGGC
CGGAGTTTCA TTTCTTTAAC TACTCCAGTT GAATTGGTGA AAAGGGCTTC CAGTGCTGTA
AAATAA
|
|---|
| Protein sequence | MKQQQVTIKD IALEVGMSTS TVSRALSDHE HISEETKARV NEAVQKLGYR YNALAAALRN
SKSNTIGLIV PRISMFFQAA VITAIQNTLH KYGYSVIICQ SNEDPEQEKK LVSLLHASRV
EGIIVSCSIK TEDFSHFDDS VGSEIPIIFY DRVPNNYPAH KIKGDEYHGA YLSTVHLIEQ
GCKHIAHIGG PLSCNQYQER FDGYKDALKK HNMPFDSSMT FFHELNKENA MNTCDLIFKR
DQVPDGIFAS NDTTALAIIE FAKKNNLAIP GALKIVGYSN DNRTDISYPT VTSVEQFPHE
MGEQAANLMM DLIQKRVNPG RSFISLTTPV ELVKRASSAV K
|
|---|
| |