| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0964 |
|---|
| Symbol | |
|---|
| ID | 8252058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1130010 |
|---|
| End bp | 1132322 |
|---|
| Gene Length | 2313 bp |
|---|
| Protein Length | 770 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644934619 |
|---|
| Product | alpha-L-rhamnosidase |
|---|
| Protein accession | YP_003091248 |
|---|
| Protein GI | 255530876 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAATC AGATTTTTAA ATTCAGCTTT TTTGCATTAA ACCTGCTTGC CTGGTACAGT
TTTACCGCCA AATCCCAGGA TTTAAAGGTG TTTGATAAAG CGACAAGCTG GATTACTTGT
GATAAGGCCC AGGACCAAAG TAATTCCTGG ATTGCATTCA GGAAGGTGGT GCAATTAGAT
GAAAAGCCTG TTAAAGCCTT GCTGGACATT AGCGTAGATT CTAAATACTG GTTATATATC
AATGAAAAAT TAGTTGTATT TGAAGGTGGC TTAAAGCGTG GACCAAATCC GGACGATACC
TATTACGATG AGGCAGACCT TACTGAGTAC TTGAAAGCGG GCACCAATAC CATTGCTGTA
TTGCTTTGGT ATTTTGGCAA GAACGGCTTT TCTCATCATT CGAGCGGGCG GGCCGGGATG
TTTTTTCAGC TTGATATGGA TAAACAAGGT AAGATTTGTT CTGACCGGTC ATGGAAATGT
TCTGTCGTAC CTGCGTATCT CAATGTGTAT AGCGGCGATC AGCCGAACTA CCGTCTGGCT
GAATCTAATG TAATTTACGA TGCAAGGTTG GCACTGGGGG ATTGGACCAG TGCATCCTAC
AACGATAAGA CATGGCGAAA TCCGTTTGTT GTTGGGCCAG CGGGCTGTAT GCCCTGGAAT
AAGCTGGTCA AACGGCCAAT CCCGCAATGG AAAGACTATG GCATCGTAAA TTTTAACCTG
AATTTTCCAT TTAATGCAAC CGGGGATACG ATAAAAGTTA AGTTACCTTA TAATGCGCAA
TTTACACCTT ATTTAAAAGT TGAAGCTACA GCCGGAAAAA CAATTGAAAT GTTTACCGAT
AATTATTCTG GAGGTTCTGA AAACAATGTT AGGGCAGAAT ATATCACAAA AACAGGTATA
CAGGAGTATG AGTCTTTCGG TTGGATGAAC GGGCATGTTA TGATGTTTGT GATACCAAAA
GGCGCTAAAG TGTTATCGCT GGGGTATCGG GAAACAGGTT ATCATACCAC ATTTGCGGGG
AGCTTTAATT GTAATGATGC ATTTTACAAT AAGCTTTGGG AAAAGTCATC CCGGACGCTT
TACGTTAATA TGAGGGACAG TTATATGGAT TGTCCGGACA GGGAGCGGGC CCAATGGTGG
GGTGATGAGG TAACTGAAAT GACGCAGTCC TTTTATGCTT TGGATCCTGA TGCTAATCTT
CTTGCAAAAA AGGGAATTGA TGAACTGACA GGTTGGCAAA GATCAGACGG AGTATTGTTT
TCTCCTATAC CTGCAGGAAA TTTTGACCTG GAGCTGCCTG TACAAATGCT GACCAGTGTG
GGATATTATG GCTTTTGGAC TTATTATTAT TATACAGGAG ATCTGGAAAC CATAAGAGCG
GCCTATCCCA GTATAAGAAA GTATTTAAGT TTATGGGAAA TGGATAAAAA CGGATTGGTT
ATCTCACGAA CGGGCGGCTG GAATTGGGGC GATTGGGGAA AAAACGTTGA TATAGATCTG
ATGTCAAATG CGTGGTATTA CCTTGCCTGT AAAGGTTATT TGGAGATGTC AAAAACCTTA
AACCATGCAG AAGAAATTAA ATGGGCTGAA AATCAAATGA GTGTGATGAA GAAAAGCTTT
GACACTCGTT TCTGGACGGG AAAGGCCTAT CGCTCTCCCG ATTATAAAGG ACAAACTGAT
GATAGGTCAA ATGCCCTGGC GGTACTTGCA GGATTGACAG CGCCTGCCAA ATATCCGCTG
CTGAAGGACG TATTTTTAAC CGAAGAGCAC TCCAGCCCTT ATATGGAAAA ATATGTGTTG
GAAGCCCTGT TCAAAATGGG CTATGCGGAC ATCGCGTTGG AGCGGTTAAA GAAACGTTAC
ACAGCAATGG TCGACAGCGA ACTAACTACA TTATGGGAAG GATGGAAAAT AGGGGTGAAC
GGCTATGGAG GGGGTTCTTA CAATCATGCC TGGAGCGGTG GTGGGTTAAT ATTGTTATCC
CGATTTGTGG CTGGAATAGA ACCAGCTTCG CCTGGTTATG AAACTGTTAA AATTGCCCCA
CAGATGGGCA GTTTAATTAA TTGCAGTGCA ACCGTAAGCA GTGTTGCAGG CTTAATAGCT
GTTAAAAATA CTTTTACAAA TGAAAAGGAG TTTAATCAGC TTATCGAATC CCCCTCGCCA
TTAAAAATTT ACTTTCCGTT TGAGGTTTAC CGGATCAAAA AAATCAGGGT CAATAACAAA
AAGCTCAGCG AGGCCTTAAT GCTGAAGTTT AAAAATGAAG GGAAGCTTGA ATTGAGCAAG
GGCAAGTATA AGTTAACTGT AAACATAAAC TAA
|
|---|
| Protein sequence | MINQIFKFSF FALNLLAWYS FTAKSQDLKV FDKATSWITC DKAQDQSNSW IAFRKVVQLD
EKPVKALLDI SVDSKYWLYI NEKLVVFEGG LKRGPNPDDT YYDEADLTEY LKAGTNTIAV
LLWYFGKNGF SHHSSGRAGM FFQLDMDKQG KICSDRSWKC SVVPAYLNVY SGDQPNYRLA
ESNVIYDARL ALGDWTSASY NDKTWRNPFV VGPAGCMPWN KLVKRPIPQW KDYGIVNFNL
NFPFNATGDT IKVKLPYNAQ FTPYLKVEAT AGKTIEMFTD NYSGGSENNV RAEYITKTGI
QEYESFGWMN GHVMMFVIPK GAKVLSLGYR ETGYHTTFAG SFNCNDAFYN KLWEKSSRTL
YVNMRDSYMD CPDRERAQWW GDEVTEMTQS FYALDPDANL LAKKGIDELT GWQRSDGVLF
SPIPAGNFDL ELPVQMLTSV GYYGFWTYYY YTGDLETIRA AYPSIRKYLS LWEMDKNGLV
ISRTGGWNWG DWGKNVDIDL MSNAWYYLAC KGYLEMSKTL NHAEEIKWAE NQMSVMKKSF
DTRFWTGKAY RSPDYKGQTD DRSNALAVLA GLTAPAKYPL LKDVFLTEEH SSPYMEKYVL
EALFKMGYAD IALERLKKRY TAMVDSELTT LWEGWKIGVN GYGGGSYNHA WSGGGLILLS
RFVAGIEPAS PGYETVKIAP QMGSLINCSA TVSSVAGLIA VKNTFTNEKE FNQLIESPSP
LKIYFPFEVY RIKKIRVNNK KLSEALMLKF KNEGKLELSK GKYKLTVNIN
|
|---|
| |