| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0956 |
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| Symbol | |
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| ID | 8252050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1115297 |
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| End bp | 1118761 |
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| Gene Length | 3465 bp |
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| Protein Length | 1154 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644934611 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003091240 |
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| Protein GI | 255530868 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.648971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACAAAA AATATTTTGC ATATAAGCGT GGTATGCCCT ATGGGAACCT ACCCAAATTT
TTTCTTGCGA TGAAATTATT ATCAGTTTTA ATATTCTTAG GCGCTTTCCA GTTAAATGCA
GCTGTGCATG CACAGTATAT TAATATAGAT GTTAAAAATA CCTCCTTAAA GGAAGTATTT
TCTATGCTCA CAAGGCAAAG TAACTATGAG TTTATGTACG ATTCTCAAAC GCTGCAGAAT
GCCAGACCGG TAACCTTGAA GGTGGTGAAT GCTACGCTTA AAGAAGTGCT GAACAAGTGT
TTTGCGAACC AGGCAATTAC TTATCAGATA AAAGAAAATA CCATTATTGT TGCAAAGGCC
GATGACCAGC CGCAGGTCTG GATGCAGGTT AACGGAATAG TATTGTCGGG AGAGGATGGG
CTGCCATTAC CCGGTGTAAT TGTGAGGGTG AAGGGAACGA ATAAATCGAT TGTGACCAAT
AACAGCGGGC AATTTACCAT CAATGCGGAG ATTGGAGATG TTTTGGTTTT GAGCTTTATT
GGCTATAAAA CCCAGGAAAT TGTAATAAAG GATGACGTTG CGCTAAAGGT AAGATTGATC
AGTTCGCCTA CCGATCTGGA TAACGTGATT GTGACAGGTT ATGGGACTAC GCAAAAATCA
GATGTCATCA GTTCATTGGG GGTTATTAAA GGTGAAGATT TACAAAAGGC CCCTGTTAAA
TCTTTTGAGG AGGCGCTGGC CGGCCGTGTG TCCGGTGTTC AGGTTACTTC TTCTGAGGGC
GGGCCGGGAG CTACCACCAA TATTGTAATA AGGGGTAACA ATTCCTTGTC TCAGGACAAT
TCACCACTAT GGGTCATTGA TGGGTTTCCA ATTGAGAATC CAAACAACAA TACGATCAAT
CCTGCTGATG TAGAGACTAT TACTGTTTTA AAAGATGCCG CGTCTACTGC CATTTATGGT
TCAAGGGGGG CTAACGGGGT TATACTCGTT ACTACTAAGA CCGGAAAGTC GGGAAACCCG
GTGGTATCCT TTGATGGTTC ATATGGCTTT CAGCGAAGTT TAAAATTGAT GGAACTGTTA
AAGCCCTATG AATATGTACA ACTTGTAATT GAAAGGAACG GGGTGGTTGC AAAAGAGCGT
TACACGCCGG GTGATCCTGA GCTGGATGGA AGGCCCGCTT ATGTTCCTGG CGGGAGAACA
ATTGATTACT ATAAAACCCA GCCTTATACC AATTGGCAGG ATAAATTGTT CCAGACTGCA
CCTTTTCAAA ATTATTCGTT GTCACTTTCT GGCGGGACAG ACAAAAGTAA ATATTTAATC
TCAGGGTCGA CCACAGACCA GGACGGGACC ATTTTACAAA CTAATTTCAA GCGTTATCAG
GGTAGATTTG TTTTCAGCCA GGAGGTGAAC AAGAAAACAG ACTTTAACCT TAATGTAAAT
TACGCCCGTA CCAGGACAAC CGGCACATCG CCTTCAAATA TACCAACCAA TGGCTCTGCA
TCATTGAGTT TATTATATGG AATATGGGGT TACCGACCGG CCGTTTCACC TTCATCTTCT
GTAGAAGATC AGCTTAACCT GCCCATCGAT CCTGATGGAC AGAATGCTTA TTCGTTTAAC
CCTATTGTTC AGAACAACAA TACTACGATC AATGCGCACC TGAATAATCT GGTGGCTAAT
GCTGGCATAG ACTATAAAAT CCTCCCCGAG CTGACGTTCC GGGTAACGGG TGGTATCAAT
TATACACAAA GACTTAGCAA CGCTTTTTAT TCTGCACTCA CCTATCAGGG TGGGCCTGGC
AGTGTACTGG GGCCTAATGG TTTTATTGAC AATTATGCCC TCACTAATCT GGTAAATGAA
AATACACTGA ATTATAAAAA GGTTTTTAAT ACTGAACATA CGCTTAATTT GCTTGGTGGT
TTTTCTATAC AAGGCACTAA ACTGACCACC AGCAGGGCGC TGGCGAGTAA AGTGCCAAAT
GATGTATTGG GTGTAAGCGG ACTAGACGAA GGCACTCCTT ATGCCATTTC ATCTGGTTCG
ACACAGAATT TTTTGAGTTC GTACTTTTCC AGGATAAACT ACAATTATAA ATCTAAGTAC
TATTTTTCAG GGGTGATCAG GGCTGATGGA TCTTCAAAAT TTGCCCCGGG TAACCAGTGG
GGTTATTTCC CTTCTGCTGC TGTATCCTGG AATATTGGGC GTGAGGATTT TATGAAAAAT
ATCAGTTCAG TTTCGGCACT AAAGTTCAGG GCCAGTTATG GTACTTCAGG TAACAACAGA
ATTGCTGACT ATGCCTATCT GTCGCCCATC AACCAAAGTG ATATTTCCAG TACCTATACC
TTTGGTAATA CTTATATAAA AGGTTCCTAT CAATCTGGTC TGGCCAATGA GGCCCTGAAA
TGGGAAACAA CTGCCATCAC AGATCTGGGC TTAGATTTTG GATTTTTAAA GAACCGCATT
GAACTTACAG TTGATTATTA TCGTAAAATA ACTTCTGACC TGTTGCTGCA GGCAACGATA
CCAGGTCATA TCGGCTATAC TTCAGCGATT CAGAATATAG GCTCGGTAAG AAATTCCGGC
TGGGAGTTTT CATTGAATAC GGTAAATTCA GATAAGGCTT TGAAATGGTC CTCTAATTTT
AACATATCCT TTAACAGGAA TGAAGTACTG GCGTTAAGCA GTGGCCAAAG GGGGCTTATT
TCCCAGGTTT CCTACAATAT TAACCCGGCT TTTCCTTACG TTGCTATTGT AGGAGGCCCG
ATTTCGCAGA TTATAGGTTT TAAATGGTTG GGCAATTACC AATATGAAGA TTTTGATCTG
CTTCCTAATG GGGCGTATGT GCTAAAGGGC AATCTGCCAG CAAATGGTTC TGCAAGGACA
GCGATGCAGC CTGGTGACAT TAAATATGAG GATATTAACC AGGATGGTAC GATTACAGAT
GCGGATAAAG TAGTCATAGG GAATCCAAAT CCATTATTTA CCGGGGGCTT TTCCAATAAT
TTTAATTTCA AAAATTTTGA CTTGAGCATA CTACTGACCT TTTCTTATGG AAATGATATC
CTGAATGCAA ACCGGTTGAT CTTCGAAGGT ATGCCAGACT CCTATACCAA TCAGTTTGCC
TCATACGCCA ACAGATGGAC ACCAGAAAAT CAGACTAATT TATATCCCAG GGCTGGCGGC
GCAACTACTA TTCCGGCTGT TTCTTCCAGG GTAATTGAAG ATGGCTCTTT CTTGCGTCTG
CAAACGGTTT CCCTTGGATA CAATCTGCCG CAAAAAATTT CTGAATCCCT TAAAGTAAAA
AATGCCAGGA TTTATGCTTC GGCACAAAAC CTGGCGGTAT GGAGTAAATA TCAAGGTTCA
GATCCCGAAG TTTCTACACG TCCCGGCGCT TTGACACAAG GATTTGATTA TGCCGCATAT
CCGCGCTCTT TTACGATGAC TTTTGGTCTT AATTTTTCTT TTTAA
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| Protein sequence | MYKKYFAYKR GMPYGNLPKF FLAMKLLSVL IFLGAFQLNA AVHAQYINID VKNTSLKEVF
SMLTRQSNYE FMYDSQTLQN ARPVTLKVVN ATLKEVLNKC FANQAITYQI KENTIIVAKA
DDQPQVWMQV NGIVLSGEDG LPLPGVIVRV KGTNKSIVTN NSGQFTINAE IGDVLVLSFI
GYKTQEIVIK DDVALKVRLI SSPTDLDNVI VTGYGTTQKS DVISSLGVIK GEDLQKAPVK
SFEEALAGRV SGVQVTSSEG GPGATTNIVI RGNNSLSQDN SPLWVIDGFP IENPNNNTIN
PADVETITVL KDAASTAIYG SRGANGVILV TTKTGKSGNP VVSFDGSYGF QRSLKLMELL
KPYEYVQLVI ERNGVVAKER YTPGDPELDG RPAYVPGGRT IDYYKTQPYT NWQDKLFQTA
PFQNYSLSLS GGTDKSKYLI SGSTTDQDGT ILQTNFKRYQ GRFVFSQEVN KKTDFNLNVN
YARTRTTGTS PSNIPTNGSA SLSLLYGIWG YRPAVSPSSS VEDQLNLPID PDGQNAYSFN
PIVQNNNTTI NAHLNNLVAN AGIDYKILPE LTFRVTGGIN YTQRLSNAFY SALTYQGGPG
SVLGPNGFID NYALTNLVNE NTLNYKKVFN TEHTLNLLGG FSIQGTKLTT SRALASKVPN
DVLGVSGLDE GTPYAISSGS TQNFLSSYFS RINYNYKSKY YFSGVIRADG SSKFAPGNQW
GYFPSAAVSW NIGREDFMKN ISSVSALKFR ASYGTSGNNR IADYAYLSPI NQSDISSTYT
FGNTYIKGSY QSGLANEALK WETTAITDLG LDFGFLKNRI ELTVDYYRKI TSDLLLQATI
PGHIGYTSAI QNIGSVRNSG WEFSLNTVNS DKALKWSSNF NISFNRNEVL ALSSGQRGLI
SQVSYNINPA FPYVAIVGGP ISQIIGFKWL GNYQYEDFDL LPNGAYVLKG NLPANGSART
AMQPGDIKYE DINQDGTITD ADKVVIGNPN PLFTGGFSNN FNFKNFDLSI LLTFSYGNDI
LNANRLIFEG MPDSYTNQFA SYANRWTPEN QTNLYPRAGG ATTIPAVSSR VIEDGSFLRL
QTVSLGYNLP QKISESLKVK NARIYASAQN LAVWSKYQGS DPEVSTRPGA LTQGFDYAAY
PRSFTMTFGL NFSF
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