| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0952 |
|---|
| Symbol | |
|---|
| ID | 8252046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1110075 |
|---|
| End bp | 1111427 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644934607 |
|---|
| Product | Tetratricopeptide domain protein |
|---|
| Protein accession | YP_003091236 |
|---|
| Protein GI | 255530864 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.099026 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATC AAATATTTTA CCTGGCCCTC TTATTGTGTA CATTCAATAG CTGCAAATCC
GACTATCTGG AAGTCAAACC AAGGCAGTCT CTACTGGTGC CCACTACCAA AACTGAGCTG
CAGGCCTTGC TTGATAATTT AGACGTGATG AATAATGCAC CTGGTATCGT TCAAGTAGCT
ACAGATGATA TTTTGATTCC TGACGCTTCA CTGCCCTCAC TCGCATCCCC ATTTGAAAAA
AATGCCTACA TATGGGAGAA AGATGTTTTT CCAGACCCCA ATGTCCCAGA GTGGACTTTA
GCCTGGAGGC AGGTCTTTTA TGCAAATGTA GTACTGGAGA TGATCAGTGG TAAAAGCGAA
ACCGAAAAGC CCACTTTTGA TGAGTTGAAA GGCGCTGCAC TATTTTTCAG GGCAATCGGC
TATTATCATC TTACCCAAAT GTTTACCAAT GGTTTTGATC CCGCAACTGC TGCTTCAGAA
AAGGGTTTAC CTATCCGCAC TGTAGCAGAT GTCAACCAGT CGCCGCCAAG AGGAAAATTG
TTGGATACCT ATAATTTCAT GACCGGTGAT TTGTTAGAGG CCAGCCGCCT GCTTCCAAAA
TTATCGGCTT ATAAAAGTAG GCCAAACCAA GTGGCCTCAT TTTCTCTGCT GGCAAGGATA
TATCTGGTGA TGCAGGACTA TGATAAGGCT TTTGAGTATG CTGATAAAGC GATACAGTTG
AATGGTACCC TTATCAACTT CAATACCTTG AACTCCGCTA GCGCCAGGCC TTTTCCAGCA
GTACTACCAA ATGGTAATGG TGAGGTAAGT TTTTATGCGG CACAAATATC TTATTCTTTT
ATGAGCTTTT TGTCTTCATC GGTCAATGTC AACCCTGCGC TTTACCAGCT GTATGATTCG
AACGATCTGC GAAAAACTAT TTTTTTTAAT GCAAGTGGGA AAAATTTTAA GGGTAATTAT
AACAATGTCA GCAGGTTGTT TGGCGGCATA GCAAATGATG AAATTTATTT AATCCGGTCT
GAAGCGCAGA TAAGAAGAAA TAAGTTACAG GAAGGACTGG ACGACTTGAA TACATTGTTA
ATTAATAGAT ATAAAACTGG AACATTTTTT TCTTATACAG TTTCTAATAC CCCTGATCCG
CTTTCACTGG TTTTAAATGA ACGCAGAAAA GAGCTTCCCT TTAGAGGTCA GAGATGGACA
GATCTAAGGA GATTAAATCA GGATGCAAAA TATAAAACGA TCCTTACAAG ACAGGTGAAT
GGTATAGACT ACAATATTTT GCCATTGGAT AAAAGGTACA CTTATCCAAT TCCCCAGTCT
GAAATTTTGA ATTCCGGCAT GGAACAAAAT TAA
|
|---|
| Protein sequence | MKNQIFYLAL LLCTFNSCKS DYLEVKPRQS LLVPTTKTEL QALLDNLDVM NNAPGIVQVA
TDDILIPDAS LPSLASPFEK NAYIWEKDVF PDPNVPEWTL AWRQVFYANV VLEMISGKSE
TEKPTFDELK GAALFFRAIG YYHLTQMFTN GFDPATAASE KGLPIRTVAD VNQSPPRGKL
LDTYNFMTGD LLEASRLLPK LSAYKSRPNQ VASFSLLARI YLVMQDYDKA FEYADKAIQL
NGTLINFNTL NSASARPFPA VLPNGNGEVS FYAAQISYSF MSFLSSSVNV NPALYQLYDS
NDLRKTIFFN ASGKNFKGNY NNVSRLFGGI ANDEIYLIRS EAQIRRNKLQ EGLDDLNTLL
INRYKTGTFF SYTVSNTPDP LSLVLNERRK ELPFRGQRWT DLRRLNQDAK YKTILTRQVN
GIDYNILPLD KRYTYPIPQS EILNSGMEQN
|
|---|
| |