Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0849 |
Symbol | |
ID | 8251943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 997921 |
End bp | 1001724 |
Gene Length | 3804 bp |
Protein Length | 1267 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644934504 |
Product | DNA-directed RNA polymerase, beta subunit |
Protein accession | YP_003091133 |
Protein GI | 255530761 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.645199 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.132686 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCAAATA AAGTCGACCA AAGAGTAAAT TTTGCACGTA GTAAGCATAT TATAGATTAC CCGGATTTTC TAGATGTGCA GTTGCAATCA TTCAGAGAAT TTTTTCAGAT AGAAACCACT TCGGATAACC GTCATACAGA GGGTTTATTT AAGGTATTTG CTGAAAATTT TCCAATCACA GATTCCAGAA ACATCTTTGT TTTGGAATTC CTTGATTATT TTATTGACCC GCCGCGTTAT GATATACCTG AGTGTATTGA CCGTGGGTTA ACTTATAGTG TTCCGTTGAA AGCTAAATTA AAGCTTTCGT GTAATGATGC TGAGCACGAA GATTTTGAAA CCATTATTCA GGATGTGTAT TTAGGGACCA TACCTTATAT GACCCCAAAA GGTACATTTG TGATTAACGG AGCAGAGCGT GTAATTGTTT CACAATTGCA CAGGTCGCCA GGTGTGTTCT TCGGCCAAAG CCGCCACACA AATGGAACTA AATTGTACTC AGCCCGTGTA ATTCCTTTTA AGGGTTCATG GATCGAGTTT GCTACAGACG TAAACAACGT GATGTATGCT TACATTGATC GTAAGAAAAA GTTCCCGGTT ACCACCTTAT TGCGTGCTAT TGGTTACGAT TCTGATAAGG ACATTTTGGA GCTGTTCGAT CTTGCCGATG AGGTAAAGGT CAGCAAATCC GGCTTGAAAA AATATATCGG GCGTAAGCTT GCAGCAAGAG TATTGAGGAA GTGGGTAGAG GATTTTGTAG ATGAAGATAC TGGTGAGGTA GTTTCAATAG ATCGTAATGA AGTGATCTTA GACAGGGATA CTGTATTGGA AGACGACCAC ATTGATATGA TCATTGATGC TGGTGTGAAG ACGATCATCT TATCTAAGGA TGATGGTGCT AGCCAGGCTG ATTATACCAT TATATATAAT ACTTTACAAA AGGATACATC TAACTCTGAA AAAGAGGCTG TTGAAAACAT CTATCGTGCT TTGCGTAATG CAGAACCACC TGATGAGGAA ACTGCAAGAG GTATCATTGA GCGTTTGTTC TTTTCGGATA AACGTTATGA CTTGGGTGAT GTGGGCAGGT ACCGCATTAA CCGTAAGTTG AAAATGGATA CTCCCGATCA TGTAAAAGTT TTAACGAAGG CTGATATCAT TGCCATTGTT AAGTACCTGA TCAAACTGAT CAACTCTAAA GAAGAGGTGG ATGATATTGA TCACTTGTCG AACCGTCGTG TTCGTACAGT AGGTGAGCAA TTGTACGCTC AGTTTGGTGT TGGTCTGGCA CGTATGGCAA GAACCATCCG TGAGCGTATG AACATCCGAG ATAACGAGGT ATTTACACCA ACTGATCTGA TCAATGCCCG TACTTTATCA TCGGTGATCA ATTCATTTTT TGGTACAAAC CAGTTGTCAC AGTTCATGGA CCAGACGAAT CCTTTGGCAG AGATTACGCA CAAACGTCGT TTGTCGGCCT TAGGCCCAGG TGGTCTGTCG CGTGAGCGTG CAGGTTTCGA GGTACGTGAC GTTCACTATA CGCACTATGG CCGTTTGTGT ACAATTGAAA CGCCAGAGGG ACCAAACATT GGTTTGATTT CTTCTTTGTG TGTTCATGCG AAGATCAATA ATTTAGGTTT CATTGAAACT CCTTATAAGA AAGTAGAGAA CGGTATTGTT TCGGTTGATG AACCGGTGAT TTACTTATCT GCTGAGGATG AAGATGGTAA AACCATTGCG CAGGCAAATG CAGCTTATGA TGATAAAGGT AATTTCACCA CTTCACGTGT AAAAGCACGT TATGAAGGTG ACTTCCCGGT TATTGAACCA GAGAAACTGG ACTTAATGGA CGTGGCGCCG AATCAGATTA CTTCAATTGC AGCTTCCTTG ATTCCTTTCC TTGAGCATGA TGATGCGAAC AGGGCCTTGA TGGGATCGAA CATGCAACGT CAGGCCGTAC CATTGTTACG TCCTGAGGCT CCTATCGTTG GTACAGGTTT GGAAGGTCGG GTAGCCCGCG ATTCAAGAAC GCTGATTAAC GCTGAGGGTG ACGGTGTGGT GGAATACGTT GATGCAAATG AGATCACCAT TAAATATGTG CGTAATGACA GTGATCGTTT AGTTTCTTTT GAAGGTGACA GTAAAACCTA TAAGTTAATC AAATTCAAAA AAACCAATCA GAATACCTGT ATCAATTTAA AGCCAATTGT TAAAAAAGGC CAGAAGGTTG TAAAAGGACA GGTGTTGTGT GAAGGTTATG CTACTGAAAA TGGTGAGTTG GCATTGGGAA GAAACTTAAA AGTTGCTTTC ATGCCTTGGC AGGGATATAA CTTTGAGGAT GCGATTGTAA TCAGTGAGCG TATTGTCCGT GAAGATATCT TTACTTCTTT ACACATCGAA GAGTTTGAGC TGGAAGTACG CGATACCAAA CGTGGGGAAG AGGAATTGAC TCCAGATATT CCTAACGTTT CTGAGGAAGC AACTAAGGAT CTTGACGAGA ACGGTATCAT CCGTATCGGT GCTGAAGTGA AAGAAGGTGA TATCCTTATT GGCAAGATTA CCCCTAAGGG AGAATCTGAT CCTTCACCGG AAGAGAAGTT GTTGCGTGCT ATATTTGGAG ATAAGGCAGG AGATGTTAAA GATGCATCTT TGAAAACCCC TCCATCTATC AGGGGTGTGG TAATTGATAC CAAATTGTTC TCAAGAGCTA AGAAAACTAC TAAAGCAGAA GAAAAATCTG CAATAGAAAA ACTAGATAAG AAATATGATC TGGCTGTTTT AAACCTTAAG AATGAGCTTG TAGATAAATT GTTCCAGATT GTGAACGGTA AAACGTCGCA GGGGGTATAC AATGTTTATA AAGAGCTATT GTTCCCTAAA GGTGCGAAAT TTACGCAGAA AAGCTTATCA GACCTTGAAT ACGCACACAT CAATCCATAC AAATGGACTA CTGATGACGA CAAGAATGAG CAGATCAAAA TGTTGTTGCA CAACTACGGT ATTCGTGTAA ACGAGGAGCT GGGTGCTTAC AAACGTGATA AATTTGCCAT TAGTGTTGGT GATGAACTTC CATCTGGTAT TGTACAGATG GCCAAGGTTT ATGTTGCCAA GAAACGTAAG TTAAAAGTAG GGGATAAGAT GGCCGGACGT CACGGTAACA AGGGTATTGT AGCCCGTATT GTTCGTGATG AAGATATGCC ATTCCTTGAA GACGGAACAC CTGTTGATAT TGTGTTGAAC CCACTGGGTG TACCTTCACG TATGAACTTA GGTCAGATCT ATGAAACTGT ACTGGCATGG GCAGGTAAAG AATTGGGTGT AAAATTTGCT ACTCCGATTT TTGATGGTGC CAAACATGAC GAAGTAGAGG ATTGGATCGC TAAGGCAGGA GTACCTGCTT CGGGCAGAAC TTATTTACAT AATGGTTTAA CGGGTGAGAA ATTTGACCAG CCAACAACTG TAGGTATCAT CTACATGTTG AAATTGGGGC ACATGGTTGA TGATAAGATG CACGCCCGTT CAATCGGACC ATACTCATTG ATTACACAGC AGCCATTGGG TGGTAAAGCC CAGTTTGGTG GTCAGCGTTT TGGTGAGATG GAGGTTTGGG CATTGGAAGC ATTTGGTGCG GCCAATATCC TGCAAGAGAT CTTAACCGTT AAGTCGGATG ATGTGATCGG AAGGGCCAAA ACCTATGAAG CGATTGTAAA AGGCGAGAAC CTTCCTACTC CAGGTGTACC GGAATCATTT AATGTATTGG TACATGAGTT ACGTGGATTA GGTTTAGATA TTACGTTAGA CTAA
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Protein sequence | MANKVDQRVN FARSKHIIDY PDFLDVQLQS FREFFQIETT SDNRHTEGLF KVFAENFPIT DSRNIFVLEF LDYFIDPPRY DIPECIDRGL TYSVPLKAKL KLSCNDAEHE DFETIIQDVY LGTIPYMTPK GTFVINGAER VIVSQLHRSP GVFFGQSRHT NGTKLYSARV IPFKGSWIEF ATDVNNVMYA YIDRKKKFPV TTLLRAIGYD SDKDILELFD LADEVKVSKS GLKKYIGRKL AARVLRKWVE DFVDEDTGEV VSIDRNEVIL DRDTVLEDDH IDMIIDAGVK TIILSKDDGA SQADYTIIYN TLQKDTSNSE KEAVENIYRA LRNAEPPDEE TARGIIERLF FSDKRYDLGD VGRYRINRKL KMDTPDHVKV LTKADIIAIV KYLIKLINSK EEVDDIDHLS NRRVRTVGEQ LYAQFGVGLA RMARTIRERM NIRDNEVFTP TDLINARTLS SVINSFFGTN QLSQFMDQTN PLAEITHKRR LSALGPGGLS RERAGFEVRD VHYTHYGRLC TIETPEGPNI GLISSLCVHA KINNLGFIET PYKKVENGIV SVDEPVIYLS AEDEDGKTIA QANAAYDDKG NFTTSRVKAR YEGDFPVIEP EKLDLMDVAP NQITSIAASL IPFLEHDDAN RALMGSNMQR QAVPLLRPEA PIVGTGLEGR VARDSRTLIN AEGDGVVEYV DANEITIKYV RNDSDRLVSF EGDSKTYKLI KFKKTNQNTC INLKPIVKKG QKVVKGQVLC EGYATENGEL ALGRNLKVAF MPWQGYNFED AIVISERIVR EDIFTSLHIE EFELEVRDTK RGEEELTPDI PNVSEEATKD LDENGIIRIG AEVKEGDILI GKITPKGESD PSPEEKLLRA IFGDKAGDVK DASLKTPPSI RGVVIDTKLF SRAKKTTKAE EKSAIEKLDK KYDLAVLNLK NELVDKLFQI VNGKTSQGVY NVYKELLFPK GAKFTQKSLS DLEYAHINPY KWTTDDDKNE QIKMLLHNYG IRVNEELGAY KRDKFAISVG DELPSGIVQM AKVYVAKKRK LKVGDKMAGR HGNKGIVARI VRDEDMPFLE DGTPVDIVLN PLGVPSRMNL GQIYETVLAW AGKELGVKFA TPIFDGAKHD EVEDWIAKAG VPASGRTYLH NGLTGEKFDQ PTTVGIIYML KLGHMVDDKM HARSIGPYSL ITQQPLGGKA QFGGQRFGEM EVWALEAFGA ANILQEILTV KSDDVIGRAK TYEAIVKGEN LPTPGVPESF NVLVHELRGL GLDITLD
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