| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0814 |
|---|
| Symbol | |
|---|
| ID | 8251903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 963617 |
|---|
| End bp | 964357 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644934464 |
|---|
| Product | Superoxide dismutase |
|---|
| Protein accession | YP_003091098 |
|---|
| Protein GI | 255530726 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0605] Superoxide dismutase |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.486373 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACAA ACACGCGTAG AAATTTTATT AAAAATACAT TAACTGCTTC TTTGGCTGTT
GCCATAGGGA CACCTGTTCT GTTAGAAGGG GGCACTGCTG CGGCTGCGGG CCTTGCTGCT
GAAGAAAAAT ATACAGGTGC TGCATTGAAG TTTACGCAGC TTCCTTTAAA ATATGCATAC
AATGCTTTAG AGCCTAATAT TGATGCGTTA ACTATGGAAA TTCATTATAC CAAGCACCAT
ACGGCTTATA TTAAGAATGT AAACGATGCC ATTGCAGCTG AAAATATACC TTATGCAACA
GAAAAAGAAT TTTTTGACAA TGCTTCCAAA CTTTCGGCCA AGGCACGTAA CAATGGTGGT
GGTGCCTGGA ACCATAATTT CTTTTTTGAA ACATTAAAAT CAGGCCCTTC GGCCGGCCCG
CAGGGAAAAC TGAAAGCTGC TATAGATAAA ACCTTTGGTT CTTATGATAA ATTTAAAGAA
CAGTTTTCGG CAGCTGCAGC TTCGCGTTTT GGCTCTGGGT GGGCCTGGCT GGTAAATGAT
AAAGGAACTT TAAAAATTAC TTCCACAGCC AATCAGGACA ATCCTTTATT TGACAATGCA
GAGGTAAAAG GTACACCTTT GCTGGGACTT GATGTTTGGG AACATGCTTA CTATTTAAAA
TATCAGAATA AACGTCCGGA TTATATTTCT AACTGGTGGA ATGTAGTAGA TTGGGATGTA
GTAGCAAAAA GGTTAAAATA A
|
|---|
| Protein sequence | METNTRRNFI KNTLTASLAV AIGTPVLLEG GTAAAAGLAA EEKYTGAALK FTQLPLKYAY
NALEPNIDAL TMEIHYTKHH TAYIKNVNDA IAAENIPYAT EKEFFDNASK LSAKARNNGG
GAWNHNFFFE TLKSGPSAGP QGKLKAAIDK TFGSYDKFKE QFSAAAASRF GSGWAWLVND
KGTLKITSTA NQDNPLFDNA EVKGTPLLGL DVWEHAYYLK YQNKRPDYIS NWWNVVDWDV
VAKRLK
|
|---|
| |