| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0794 |
|---|
| Symbol | |
|---|
| ID | 8251883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 941510 |
|---|
| End bp | 943915 |
|---|
| Gene Length | 2406 bp |
|---|
| Protein Length | 801 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644934444 |
|---|
| Product | glycoside hydrolase family 3 domain protein |
|---|
| Protein accession | YP_003091078 |
|---|
| Protein GI | 255530706 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTATA AATCATTTTC TACGCTGGCT TTTTTGTTTT TGGTAACAAC TGCCGGTGCG
CAGCTCAAAA ATATCTATCA TAAGGGCTGG GTAGATTTTA ATAAAAATGG GAGGATGGAT
GTTTTTGAAG ATCCGTCAAG GCCTGTTGAT GCAAGGGTGA AAGATTTGCT GGGGCAAATG
AACCTGGACG AGAAAACCTG TCAGACAGCA ACACTTTACG GTTACGGAAG GGTTCTAAAA
GACGAAATGC CGACAGCGGA ATGGAAAACG AGTATCTGGA AAGATGGTAT CGCAAATATA
GATGAGGAAC TGAATAGCCT GCCTTATAAT AAAAAGGCCG TTACACAATA TTCTTTCCCT
TTTAGCAAAC ATGCCCATGC CATTAATACC GTGCAGAAGT GGTTTGTAGA GGAAACCCGC
CTGGGTATTC CGGTAGATTT CAGTAATGAA GGTATTCATG GTTTATGCCA CGATCGGGCT
ACCCCTTTTC CGGCCCCTGT GAATATCGGC AGTACCTGGA ACAAAAGTAT TGTGTACCAG
GCAGGAAGTA TTGTTGGCCG TGAAGCAAAG GCATTGGGCT ATACCAATGT ATATGCACCG
ATCCTTGATG TTGCCCGCGA CCAGCGCTGG GGAAGGGTAG TGGAATGTTA TGCAGAAGAC
CCTTTTTTGA TTGCAGAATT AGGTAAACAA ATGACCATGG GTATCCAGGA CCAGGGAACT
GCTGCTACCT TAAAGCATTA TGCTGTATAT AGTGTGCCTA AAGGCGGACG CGACGGACAG
GCACGTACTG ATCCGCATGT AGCGCCAAGG GAAATGCATG AAATGTTCCT ATATCCGTTC
AGAAGAGTAA TCCAGGAAGC TAAACCTATG GGCATCATGA GCAGTTATAA TGATTGGAAC
GGAGAACCTG TAACCGGAAG TTATTATTTT CTTACAGAGC TGCTGCGTAA ACAATACGGT
TTTGATGGCT ATGTGGTTTC GGACAGTGAA GCGGTAGAAT TTATTTCGGG TAAACATCAT
GTGGCAGAAG ATTACAAGCA GGCTGTTAAA CAGGCTATAG AGGCTGGCTT AAATGTGCGT
ACCCACTTTA CCAAGCCCGA AAACTTTATC CTTCCGCTAA GAGAATTGGT TAAGGAAGGT
TCGGTATCTA TGAAAACGCT TGATGAACGT GTGGCTGATG TATTGCGTGT AAAGTTCAGA
CTGGGCCTTT TTGATGACCC TTATGTAAAA GACCCGGCCG CTGCAGACAA AAAGGTGCAT
ACCAGGGCGG ATGAAGAGCT GGCGGTACAA CTGAACAGGG AATCTATGGT ATTGTTAAAA
AACGATAAAA ACCTGTTGCC ACTTGATATT GCTAAATATA AGCGCATCCT GGTTAGCGGA
CCATTGGCTA CCGAGATAAA TTACACCACC AGCAGGTATG GCCCCTCAAA TAACCCTATT
GTTTCTATCC TTGATGGAAT AAAAGCTTAT GCAGGTAAAA ATTCAACAAT AGCCTATAGT
AAAGGCTGTG AGGTGATTGA CGCCAAGTGG CCGGAAAGTG AGATTATTCC TGTCGAACTT
ACCACTGAAG AACAGCTGCA AATTGACCAG GCTGTGGCAG CTGCAAAAGC ATCAGATGTT
ATTATTGCTG TAGTAGGAGA GACCGATGAA CAGGTTGGGG AAAGTAAATC CAGAACCGGC
TTAAATTTGC CGGGGCGCCA GTTAATGCTG TTACAGGCCT TGCATGCTAC AGGCAAGCCT
GTAGTAATGG TTATGGTGAA CGGACGTCCT TTGACCATCA ACTGGGAAAA CCGCTACTTG
CCGGCCATCC TGCAGGCAGG ATTTCCCGGG CCATCAGCAG GTAAAGTAGT AGCCGAAACA
TTATTCGGTG ATAACAATCC CGGAGGTAAA CTGACAATGA CCTATCCAAA ATCTATCGGG
CAAATTGAGC TGAATTTCCC TTTCAAACCA GGATCGCAGG CTGGTCAGGG TAAAAATGAC
GATCCAAACG GGAACGGAAA AACCAGGGTG CTTGGTGCGC TGTACCCATT TGGATACGGC
TTAAGTTATA CCACTTTTGA GTTCAGTAAT TTAAATCTGG ACAAGAAAGA AATCCATAAC
CAGGCCGATG TACAGGTCAG TGTTGATGTG AAAAACACCG GTCAGCGCAA GGGTGATGAA
GTGGTACAAC TGTACCTGAA AGATGTAGTC AGCAGCGTGA CTACCTATGA ATCTGTATTG
AGGGGATTTG AACGTGTGAG TCTGGCACCC GGTGAAACCA AAACCCTTAA GTTTACCCTT
CATCCGGACG ATCTGGCCAT CCTTGATAAA AACATGAACC GGACTGTTGA ACCCGGAAAA
TTCATTGTCA TGATTGGTAA CTCTTCAGAA GATATTAAAC TGAAAAAGGA ATTTACAGTA
AAATAG
|
|---|
| Protein sequence | MKYKSFSTLA FLFLVTTAGA QLKNIYHKGW VDFNKNGRMD VFEDPSRPVD ARVKDLLGQM
NLDEKTCQTA TLYGYGRVLK DEMPTAEWKT SIWKDGIANI DEELNSLPYN KKAVTQYSFP
FSKHAHAINT VQKWFVEETR LGIPVDFSNE GIHGLCHDRA TPFPAPVNIG STWNKSIVYQ
AGSIVGREAK ALGYTNVYAP ILDVARDQRW GRVVECYAED PFLIAELGKQ MTMGIQDQGT
AATLKHYAVY SVPKGGRDGQ ARTDPHVAPR EMHEMFLYPF RRVIQEAKPM GIMSSYNDWN
GEPVTGSYYF LTELLRKQYG FDGYVVSDSE AVEFISGKHH VAEDYKQAVK QAIEAGLNVR
THFTKPENFI LPLRELVKEG SVSMKTLDER VADVLRVKFR LGLFDDPYVK DPAAADKKVH
TRADEELAVQ LNRESMVLLK NDKNLLPLDI AKYKRILVSG PLATEINYTT SRYGPSNNPI
VSILDGIKAY AGKNSTIAYS KGCEVIDAKW PESEIIPVEL TTEEQLQIDQ AVAAAKASDV
IIAVVGETDE QVGESKSRTG LNLPGRQLML LQALHATGKP VVMVMVNGRP LTINWENRYL
PAILQAGFPG PSAGKVVAET LFGDNNPGGK LTMTYPKSIG QIELNFPFKP GSQAGQGKND
DPNGNGKTRV LGALYPFGYG LSYTTFEFSN LNLDKKEIHN QADVQVSVDV KNTGQRKGDE
VVQLYLKDVV SSVTTYESVL RGFERVSLAP GETKTLKFTL HPDDLAILDK NMNRTVEPGK
FIVMIGNSSE DIKLKKEFTV K
|
|---|
| |