Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0786 |
Symbol | |
ID | 8251875 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 928098 |
End bp | 930200 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644934436 |
Product | polysaccharide lyase family 8 |
Protein accession | YP_003091070 |
Protein GI | 255530698 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAT TATTTGTAAC CTGTATAGTC TTTTTCTCTA TTTTAAGTCC TGCTCTGCTT ATTGCACAGC AGACCGGTAC TGCAGAACTG ATTATGAAGC GGGTGATGCT GGACCTTAAA AAGCCTTTGC GCAATATGGA TAAGGTGGCG GAAAAGAACC TGAATACGCT GCAGCCTGAC GGTAGCTGGA AGGATGTGCC TTATAAAGAT GATGCCATGA CCAATTGGTT GCCAAACAAC CACCTGCTAC AATTGGAAAC TATTATACAG GCTTATATTG AAAAAGATAG TCACTATTAT GGCGACGATA AAGTGTTTGA CCAGATTTCC AAAGCTTTTA AGTATTGGTA TGACAGCGAC CCGAAAAGCC GCAACTGGTG GCACAATGAA ATTGCCACTC CGCAGGCCCT TGGTGAAATG CTGATCCTGA TGCGTTACGG TAAAAAGCCG CTTGATGAAG CATTGGTGCA TAAATTGACC GAAAGAATGA AGCGGGGCGA ACCGGAGAAG AAAACGGGGG CCAACAAAAC AGATATCGCC CTGCATTACT TTTATCGTGC TTTGTTAACG TCTGATGAGG CTTTGCTTTC CTTCGCCGTA AAAGAATTGT TTTATCCCGT ACAGTTTGTA CACTATGAGG AAGGCCTGCA ATACGATTAT TCCTACCTGC AGCACGGTCC GCAATTACAG ATATCGAGCT ACGGTGCCGT ATTTATTACC GGGGTACTGA AACTTGCCAA TTACGTTAGG GATACCCCTT ATGCTTTAAG TACCGAGAAA CTGGCTATAT TTTCAAAGTA TTACCGCGAC AGTTATCTGA AAGCTATCCG TGGAAGTTAT ATGGATTTTA ACGTAGAAGG CCGCGGAGTA AGCCGGCCAG ACATTCTAAA TAAAAAGGCA GAAAAAAAGA GGTTGCTGGT GGCGAAGATG ATCGATCTTA AGCATACTGA AGAATGGGCT GATGCGATAG CCAGGACAGA TAGCACAGTT GCGGCCGGCT ATAAGATTGA GCCCTATCAC CATCAGTTCT GGAATGGTGA TTATGTGCAA CATTTAAGAC CTGCCTATTC TTTTAATGTT CGTATGGTGA GTAAGCGGAC CCGACGCAGT GAATCCGGCA ATAAAGAAAA CCTGCTGGGC AGGTATTTAT CTGATGGGGC TACTAACATA CAATTGCGCG GACCAGAATA CTATAACATT ATGCCGGTAT GGGAATGGGA CAAGATTCCT GGCATAACCA GCCGTGATTA TTTAACCGAC AGACCTTTGA CGAAGCTTTG GGGAGAGCAG GGGAGCAATG ACTTTGCAGG AGGGGTGTCT GATGGTGTAT ACGGGGCCAG TGCCTACGCA TTGGATTACG ATAGCTTACA GGCAAAGAAA GCCTGGTTCT TTTTTGACAA AGAGATTGTA TGTCTTGGTG CCGGTATCAA CAGCAATGCC CCTGAAAACA TTACCACTAC CCTTAACCAG AGCTGGTTAA ATGGCCCGGT TATAAGTACT GCAGGTAAAA CCGGCCGGGG TAAAATAACA ACGTTTAAAG CACAGGGACA GTTCTGGTTG TTGCACGATG CGATTGGTTA TTACTTTCCT GAAGGGGCCA ACCTTAGTCT GAGTACCCAG TCGCAAAAAG GCAATTGGTT CCACATCAAC AATTCACATT CAAAAGATGA AGTTTCTGGT GATGTATTTA AGCTTTGGAT CAACCATGGT GCCAGGCCAG AAAATGCGCA GTATGCTTAT ATCGTTTTGC CGGGAATAAA CAAGCCGGAA GAAATTAAAA AATATAATGG AACGGCACCG AAAGTCCTTG CCAATACCAA CCAGCTGCAG GCAGTTTATC ATCAGCAGTT AGATATGGTA CAGGCTATCT TCTATACAGC TGGAAAATTA AGCGTAGCGG GCATAGAAAT TGAAACAGAT AAGCCATGTG CAGTGCTGAT CAAGCACATC AATGGCAAGC AGGTAATTTG GGCTGCCGAT CCATTGCAAA AAGAAAAGAC TGCAGTGTTG AGCATCAGGG ATTTAAAAAC AGGAAAAACA AATCGGGTAA AAATTGATTT TCCGCAACAG GAATTTGCAG GTGCAACGGT TGAACTGAAA TAG
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Protein sequence | MKKLFVTCIV FFSILSPALL IAQQTGTAEL IMKRVMLDLK KPLRNMDKVA EKNLNTLQPD GSWKDVPYKD DAMTNWLPNN HLLQLETIIQ AYIEKDSHYY GDDKVFDQIS KAFKYWYDSD PKSRNWWHNE IATPQALGEM LILMRYGKKP LDEALVHKLT ERMKRGEPEK KTGANKTDIA LHYFYRALLT SDEALLSFAV KELFYPVQFV HYEEGLQYDY SYLQHGPQLQ ISSYGAVFIT GVLKLANYVR DTPYALSTEK LAIFSKYYRD SYLKAIRGSY MDFNVEGRGV SRPDILNKKA EKKRLLVAKM IDLKHTEEWA DAIARTDSTV AAGYKIEPYH HQFWNGDYVQ HLRPAYSFNV RMVSKRTRRS ESGNKENLLG RYLSDGATNI QLRGPEYYNI MPVWEWDKIP GITSRDYLTD RPLTKLWGEQ GSNDFAGGVS DGVYGASAYA LDYDSLQAKK AWFFFDKEIV CLGAGINSNA PENITTTLNQ SWLNGPVIST AGKTGRGKIT TFKAQGQFWL LHDAIGYYFP EGANLSLSTQ SQKGNWFHIN NSHSKDEVSG DVFKLWINHG ARPENAQYAY IVLPGINKPE EIKKYNGTAP KVLANTNQLQ AVYHQQLDMV QAIFYTAGKL SVAGIEIETD KPCAVLIKHI NGKQVIWAAD PLQKEKTAVL SIRDLKTGKT NRVKIDFPQQ EFAGATVELK
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