| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0770 |
|---|
| Symbol | |
|---|
| ID | 8251859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 900051 |
|---|
| End bp | 903293 |
|---|
| Gene Length | 3243 bp |
|---|
| Protein Length | 1080 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644934420 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003091054 |
|---|
| Protein GI | 255530682 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAT CTATACCACT ACTTTTTATT TTGCTGCTCT TTGCAGGCAT TTCTTTTTCA
CAGCAACAGA ACCGTACAAT CTCGGGTAAA GTTATGAGCC AGGCAGAAGA TGAACTGCTG
GCTGGCGTAT CTGTGGGTAT AAAAGGAAAA CCTACGGCAG TGAGCACAGA CATCAACGGG
GCTTTTAAAA TAACCCTTCC CTTAAACGGA GAAATAACGC TTGTATTTAA ATACATGGGC
TACAAACCCA GAGAAGTAAA AGTTACAGAT GAAAAGGAGC TGACGGTAAG GATGCAGCCA
GAAGCCTATA TGCTGAACGA GGTGGTTAGC ATTGGTTACA AAACCTTGCA GCGCAAAGAC
ATTACGGGTG CAGTGGCTTC AGTAAATGCA AGGCAACTGA AAGATATCCC CATTAACTCG
GCAGCAGAAG CGCTGGCAGG CCGGTTGGCT GGAGTTCAGG TTACCGCAAA TGAAGGTATG
CCCGGCTCGG ATGTGAGGAT CCTTGTTAGG GGTGGAGGTT CCATTACGCA AAGTAACGCG
CCTTTATACG TCATAGACGG GGTGCAGGTA GAGGATGGGC TGTCGAACAT TGCACCATCA
GATATAGAAT CTGTTGAGGT TTTAAAAGAT GCTTCAGAAA CTGCTATTTA TGGTGCAAGG
GGCGCAAACG GAGTAATTGT GGTGACTACC AAAGGGGGGC GGGAAGCTAA GACCAGGATC
AGCTATGACG GTTTTTTCGG ACTGGCACAA TTGCAGCGTA AACTGGAAGT GATGAGCCCC
TATGATTTTG TACTCAGACA ATATGAAAGG AGCCGTGGCC TGACCAATAA TGAAACTGCC
TTTCAGCAGG TTTACGGCGA TTTTGCAGAT CTGGGCCAGT ATAAAAACAT TGCAGGAATA
GACTGGCAGG AAAAAACCTT TGGCCGCGAT GCAGTTTCGC AGACCCATAC AATTGCCCTA
ACCGGTGGAG GAAAGGCCAC CACTTTTAAT GTGAGCTATA CCAACAATGC GCAGCAGGGC
ATCATGCTGA ATTCGAAGTT CAACAGGCAG CTGATCAATT TAAAGCTAGA CCACCGTGCC
AGTGAAAAGC TGAGGGCAGG CTTCGGCATG CGGTACAACG ATCAGAAAAT CAATGGCTCT
GGTGTTTCCA CCAGCGAAAC AACAGCTACC TACAGCCTGC TTAGGCATAC CATTAAATAC
AAGCCTTTAA ACACCACCGG TTTAAGTGAT GACGTACAGG ACGAGGATTA TTTTAATGAT
ACCAATACCG GCAATGGCCT GGGTGTACTG AACCCTATTC AGTTGAGTGA TGCCCAATAC
CGGAACCGGC CTTCAAACAA CCTGAACATC AATGGTTACC TTAATTATAT ATTAACCAAA
GGCCTTTCTT TCAGATCTAC CGCAGGAGTT AATTTTACCA ATACTACCAT CAATTCCTTT
GATGATTATT TTACTTCCAA TGCCCGTCAG AACGGTGGCG GTCTGCCCAT TGTTAACATT
AACAATACCA AACGTTTCAG CCTCAACAAC TCTAATGTAT TCACCTATAC TTTAAAAAAG
AAGGCCCATA ACTTTAGTGC ATTACTCGGA CAGGAAATCT ATAATTTAAG GGACGAGGTG
AAGCTGGACC AGCTGAAACA GTTTTCTATG GGCATTACAC CCGAAAAGGC TTTGGGCCAG
CTTAGTCTGG GCGTCAGCTC GCCACTGTTC CCGGCCAATG TCATCACCGA GAGCCACCTG
CTTTCGTTCT TTGGTGGCCT GAATTATGCC TACAATGATA AATACCTGGC AAAGCTGACC
TTCCGTACCG ATGGTTCTTC AAAATTTGCA ACAGATAAAC GCTGGGGCTA TTTCCCTTCC
GGGTCAATAG GATGGCGCAT CTCAAAAGAA GATTTTATGA AGGATGTGCA TTTTATTTCT
GACCTGAAAC TCCGCGCCAG CTATGGGGCT TCGGGCAATA ACAGGATTGA CGATTACCTT
TACCTGACCA CTTTTACCAC CAATGCCAAA TATGCTTTAA ATGAGATCGT AAACGCTGGT
TTTACCTCTT CTTCATTGGC CAATAAAAAC CTGAAATGGG AAACTACAGT AACACAGAAT
ATCGGTTTGG ACATCGCCCT TTGGGATAAC CGCCTGCAAC TGAATATTGA TGCGTATAAA
AACAAGGTGA AAGACCTTTT ACTGAATGTG CGGATACCAT CTATTTCCGG TTACACCACA
CAACTCCAGA ATGTAGGGCA AACCTCTAAT AAAGGACTGG AATTTCAGTT AAATGCCATT
CCGGTACAGA ACAAGAATTT CTCCTGGACA ACCAATTTCA ACCTTGCCTT TAACCGGAAT
AATATTGACA GGCTGTCTAC CGCCTCCAGT TATCTTCCTG CACCAGCCGT ATCTTTTGTT
TCCGGTCAGC CTTCCGACTA TATCGTTAAA GTAGGTAAGC CCGTAGGTTC TATGTACGGT
TTTGTATCGG ATGGTTTTTA TAAAGTAGAT GATTTTAACT ATGATCCAGC TACGCAAATT
TATACGCTTA AAGCAGGGGT AGCCGATGTA TCTGGTGTAA TTGGTACAGC ACAACCGGGC
TGGATGAAAC TGAAAGACCG TGATGGCGAT AACATCATTA CGGAAAATGA CAAGGACATC
ATCGGCAATG CCACACCTAA ATTTACAGGG GGCTTTAATC AGCAGTTTAC TTACAAAAAT
TTTGACATGA GCATGTTTGT GAACTTTGTT GTTGGCAATG ATATTTACAA TGCCAACAAA
GTGGAGTTTA CCAACAGCTA TACACCCAAT ACCAATATGC TGGCCATTAT GAACAACCGC
TGGAAAATGA TTGATGCCAA TGGTGTGGTA GTACAAAAGG TGACTGTAAC AGGTGGGGTG
GCCCAGGTAA CCGGCATAGC ACCGGACCAG CTGGCGGCAC TGAACAAGGA TGCGAACATT
TGGATGCCCA TCAGTGGTAC AGGTGCTTTT TATCCTACCT CATGGGCAGT TGAAGATGGT
TCTTTTCTAC GACTCAATAA CATTACCCTG GGGTATACTT TTCCGGTTAA ACTGCTGAGC
AGGGCAAAAA TAAACAAGCT TCGGGTATAT GTTACGGCAA ATAATGTGGC CGTTATAACC
GGCTATTCCG GTTTTGACCC CGAAGTGAAT GTCCGCAGTT CCAATCCGGT AACGCCGGGG
GTAGATTATT CCGCTTATCC GCGCAGCCGC ACTTATCTGT TTGGCATTAA CCTTTCCCTT
TAA
|
|---|
| Protein sequence | MKRSIPLLFI LLLFAGISFS QQQNRTISGK VMSQAEDELL AGVSVGIKGK PTAVSTDING
AFKITLPLNG EITLVFKYMG YKPREVKVTD EKELTVRMQP EAYMLNEVVS IGYKTLQRKD
ITGAVASVNA RQLKDIPINS AAEALAGRLA GVQVTANEGM PGSDVRILVR GGGSITQSNA
PLYVIDGVQV EDGLSNIAPS DIESVEVLKD ASETAIYGAR GANGVIVVTT KGGREAKTRI
SYDGFFGLAQ LQRKLEVMSP YDFVLRQYER SRGLTNNETA FQQVYGDFAD LGQYKNIAGI
DWQEKTFGRD AVSQTHTIAL TGGGKATTFN VSYTNNAQQG IMLNSKFNRQ LINLKLDHRA
SEKLRAGFGM RYNDQKINGS GVSTSETTAT YSLLRHTIKY KPLNTTGLSD DVQDEDYFND
TNTGNGLGVL NPIQLSDAQY RNRPSNNLNI NGYLNYILTK GLSFRSTAGV NFTNTTINSF
DDYFTSNARQ NGGGLPIVNI NNTKRFSLNN SNVFTYTLKK KAHNFSALLG QEIYNLRDEV
KLDQLKQFSM GITPEKALGQ LSLGVSSPLF PANVITESHL LSFFGGLNYA YNDKYLAKLT
FRTDGSSKFA TDKRWGYFPS GSIGWRISKE DFMKDVHFIS DLKLRASYGA SGNNRIDDYL
YLTTFTTNAK YALNEIVNAG FTSSSLANKN LKWETTVTQN IGLDIALWDN RLQLNIDAYK
NKVKDLLLNV RIPSISGYTT QLQNVGQTSN KGLEFQLNAI PVQNKNFSWT TNFNLAFNRN
NIDRLSTASS YLPAPAVSFV SGQPSDYIVK VGKPVGSMYG FVSDGFYKVD DFNYDPATQI
YTLKAGVADV SGVIGTAQPG WMKLKDRDGD NIITENDKDI IGNATPKFTG GFNQQFTYKN
FDMSMFVNFV VGNDIYNANK VEFTNSYTPN TNMLAIMNNR WKMIDANGVV VQKVTVTGGV
AQVTGIAPDQ LAALNKDANI WMPISGTGAF YPTSWAVEDG SFLRLNNITL GYTFPVKLLS
RAKINKLRVY VTANNVAVIT GYSGFDPEVN VRSSNPVTPG VDYSAYPRSR TYLFGINLSL
|
|---|
| |