| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0519 |
|---|
| Symbol | |
|---|
| ID | 8251606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 627952 |
|---|
| End bp | 629796 |
|---|
| Gene Length | 1845 bp |
|---|
| Protein Length | 614 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644934169 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003090805 |
|---|
| Protein GI | 255530433 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.479378 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0000880431 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAT CTTCCATTAA ATTTTTAATT GCTGCTTTTA TACTGCCCTG CAGTTTTGTA
AATGCACAGG ATACACTCAG ATATACCGGA AAAACGATTG TTAATGTTGA TTATCACCAT
GGTCAGCTTC CTCCGGCAGT TGGAGTCCAT AATATACAGG TGTTCCGGGC CGACCGCTCC
AATCCGGACA AGGCCACTGG GTTAAACTGG ACTTACAGTC ACCAGCCCAT GCTGGCTTAC
TGGAACAATA AATTTTATCT GCAATACCTG AGTAATCCGG TTGGGGAGCA TATCCCCCCC
GGACAAACAC TCCTGACCAC TTCTTTGGAT GGAAAAACCT GGGAAACACC CAGGGTAATT
TTTCCACCCT ATAAAATAGC CGATGGTACC AGGAAAGCGG GGATTGATCA GGTGGCAAAA
AACCTTACTT CGGTGATGCA CCAGCGGATG AGCTTTTTCT TATCCGGAAA AAAGCGTTTG
CTGGCACTGG CTTACTATGG GATTTCTTTT AACCCTAAAG ATAGCCCGAA TGATGGAAAC
GGGATAGGCC GTGTAGTGCG GGAAATTTTA CCGGATGGGA AATTCGGTCC GATTTACTTT
ATCAACTATA ACCACCTGTA CAGTGAAAAA AACACAAACT ATCCCAATTA TAAACGTAGT
AAGGATAAGG GCTTTGTTGC AGCCTGCAAC GAGCTGCTGG GCAATGCTTT GATGGTGCAG
CAATGGGCCG AAGAATCTGA TGACAATGAT CCGCTGATTA AATTAAAGGG TGATTATAAG
GCTTTTAGTT ATTACCACCT GCCCGACAAC AGGGTTGTTG GGCTTTGGAA AAATGGCTTG
ACCAGTATCA GCAAGGATGA AGGCAAAACC TGGGAATATA AACCTTTGAG GGCGCCTAAA
GTGGTAAACA GTAATGCCAA GATCTGGGGG CAGCGTACCT CAGACGGAAA GTTTGTTACC
GTATATAATC CATCAGAATT CAGGTGGCCG CTTGCCCTTT CTGTGAGTAA TGAAGGGTTG
AATTATGATG ATTTACTGCT GGTGCATGGA GACATTACCG CCATGCGTTA TGGCGGTTCA
TATAAGTCCT ACGGCCCCCA GTATGTAAGG GGAATTGAGG AAGGTAACGG CGTGCCGCCG
GATAAAAAAT TATGGGTTAC CTATAGCGTT AATAAGGAAG ATATCTGGGT ATCTTCCATT
CCCGTGCCAG TAAAAGCAAA GGCCGATCAG CAGGCAAATG AAGTGTTCAA TACCATGCCG
GATGCTGAAG AACTTGTAAA CTGGAATACC TATAGCCCCC TAAGAGCACC TGTAAAAATA
GTTAAAATGC CCGACGGGAA TAAAGGACTT TCTTTGGCTG ATTTTGACCC TTTTGACTAT
GCCAAGGCAG AAAGAGTTAT TCCTGCGTCC AAAAAACTGA TTGCTGCCTT TTCAGTTATT
CCGCAGCAAA ATGACAATGG GCTGCTGAAT ATAGAATTTC AGGATGCCAG GGGAGCTGCT
GGTATCAGGC TTTCTTTTGA TGATAAGAAG GTCTTAAAGC TAAAGGCGGG TTATAGAGAT
AAGCACCTGA TGAATTATGT GGCCGGACAG CGTTATGATA TTGAGGTGAA ACTGGATGTG
GATACCAGAT TGTATACCGT AACCGTAAAC GGGCAGCAAA TGGGAAACAG CTTTTTGTTT
GCACCATTGG AAAGTGTTTC CCGCATTGTT TTTAAAACTG GTGACGTGGT ACGTTTTCCA
GATGCGGATA CGCCTACCGA TCAGAATTAT GATCTTCCGG ATGCCGATGG CAAAACTAAA
CCTGCTGGTT TTTATATTCC ATCCCTTCAA ACAAAAACTT TTTAA
|
|---|
| Protein sequence | MKSSSIKFLI AAFILPCSFV NAQDTLRYTG KTIVNVDYHH GQLPPAVGVH NIQVFRADRS
NPDKATGLNW TYSHQPMLAY WNNKFYLQYL SNPVGEHIPP GQTLLTTSLD GKTWETPRVI
FPPYKIADGT RKAGIDQVAK NLTSVMHQRM SFFLSGKKRL LALAYYGISF NPKDSPNDGN
GIGRVVREIL PDGKFGPIYF INYNHLYSEK NTNYPNYKRS KDKGFVAACN ELLGNALMVQ
QWAEESDDND PLIKLKGDYK AFSYYHLPDN RVVGLWKNGL TSISKDEGKT WEYKPLRAPK
VVNSNAKIWG QRTSDGKFVT VYNPSEFRWP LALSVSNEGL NYDDLLLVHG DITAMRYGGS
YKSYGPQYVR GIEEGNGVPP DKKLWVTYSV NKEDIWVSSI PVPVKAKADQ QANEVFNTMP
DAEELVNWNT YSPLRAPVKI VKMPDGNKGL SLADFDPFDY AKAERVIPAS KKLIAAFSVI
PQQNDNGLLN IEFQDARGAA GIRLSFDDKK VLKLKAGYRD KHLMNYVAGQ RYDIEVKLDV
DTRLYTVTVN GQQMGNSFLF APLESVSRIV FKTGDVVRFP DADTPTDQNY DLPDADGKTK
PAGFYIPSLQ TKTF
|
|---|
| |