| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0517 |
|---|
| Symbol | |
|---|
| ID | 8251604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 623244 |
|---|
| End bp | 626483 |
|---|
| Gene Length | 3240 bp |
|---|
| Protein Length | 1079 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644934167 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003090803 |
|---|
| Protein GI | 255530431 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00691283 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAG AAAATAATAA GCAGCTTTTT ATAAAAGCTA TACGCAAGCT GGCCCTGATG
ATGGGTTTAC TGATAACTGC CATGCAGCTG TATGCAGGTG TACGTGTTGA ACCTGGTTTG
GTTAATGGGC CTACAGTTCT TTTTGCGGAT ATAAAAGTGA GCGGACGCGT ATCTGATGAT
AAAGGTTTAG GTCTGCCTGG TGTAAGTGTA AAGCTTAAAG GTACAAATAC CGGAACGGTA
ACAGATGCAA AAGGGAATTA CAGTTTAATT GTACCGGATA ATGGTATTTT GGTATTCAGT
TTTACAGGTA CCATAACCAA AGAGGTACAG GTTAATAACC AGAAAACTAT TGATGTTAAA
CTGGCAGAAG ATGTGAAAAC ATTAAATGAA ACCGTAGTAA TAGGCTATGG AACCCAGTCT
AAAAAAGCAG TTACAGGTTC TGTGGCCTCT ATTGGTTACG ATAAATTTAA AGACCGTTCT
TATTCCAACG TTACCCAATC CCTTGCCGGA CAGGTAGCAG GTGTAAACAT CAGTCAGGGC
CAGGGCGCAC CCGGCGTAGC TCCAATCATC CGGATCCGGG GTGTAAGTTC GATTACCGCT
GGTACCAACC CGCTTTTTGT AGTGGATGGT GTACCACTGG AAAATTTTAA CCTCAACCTG
ATCAATTCCC AGGACATTGC TTCAGTAGAA GTACTAAAGG ATGCTTCCTC TGCAGCTATT
TATGGATCAA GGGGTGCCAG TGGGGTTATC CTTGTTACTA CCAAAATGGG AAAATCGGGT
AAGACTGACA TCAATGTTAA CCTGGAATAC GGCAGCCAAA AAGTAGCGCG GATGATCGAT
ATGATGGATG CCCAGCAATG GATCCAATAC TACATTCTGG CTAAAAACAA CTCCTGGACG
GATCTGGGGG GTGGCAGAAA GGCTTCTGAC CCAAATAGCT TGAGGGGAAA TGCTTCTACG
TATAAAATTC CTGAAGAATT TATCAATAGT CCGGAGCAGT TCGGGAAAGG TACAGACTGG
CAGGACGTGA TGTTTAGGGT GGCCCCGATG AAAAGCGGGC AGTTGTCCGT TTCTGGGGGT
ACAGACAAAA CACAATTCCT CTTCTCGGCT TCTTATTTAG ACCAGGATGC GGTACTCGAC
CAAAATTATT ATAAGCGTTT ATCCTTGCGC TCAAATGTAA AACACAATGT GTCTGACAAA
TTTACCCTTG GCATGAACCT GAGCTTTACC GGGATTTACG ACCGTACTGA CGGCACCCAG
GGAAAAAGTG ATGTAATTGG CTTAGCCCTG CAAAGCGACC CGTTTTTTCC ATTGTACAAT
GAAAATGGAA ATCTGGGAAT GGCCGACCCT AACTCCATCT GGAACCGCTA CCTGCAATAT
AATCCGGTCA ATTTATGGCA CCCTTATGCC ACCACCCGGT TTACCGATAA GCAAAATAAA
GCCTTCAATA CGCTGGCCAT CGGTTATGCA GAATATAAAA TACTCAATAA CCTGAAGTTC
CGCACCAGTT TAAACGGAAA CCTGGGCAAC AATCGGTACA ACTATTACCT GATCAAAAAC
CAGGGATATG GGTTCAACCA ATCGCTGACA CCTTCTACAG GAACGGCATC CAGTGGCTAC
CTGCTCAACT GGTTAAATGA GAATACCCTG AACTACGATC TGAAAGTTAA AGATCATACC
TTCAATGTGC TTGCAGGGTA TACCGTTCAG AAACAACACG ATGAGTTCCA GTCGGCCACG
GCAACCAATT TTCCTAACGA TCTGGTCCAT ACCTTAAATG CAGGCACTGT CACCTCCGGA
ACCTCTACCA TCTCTGAATG GTCGATGATC AGTTACCTGG CTCGTTTGAA TTACAACTAC
AAAAACAGGT ACTTTTTAAC TTCCACTATC CGAAGAGATG GCAGTTCCCG TTTTGGTATC
AACAACAAAT GGGGTTATTT CCCATCGGTA TCCGGTGCAT GGATTGCATC TGACGAAAGT
TTCCTGGCAA ACATCAAAAC AATTTCCTTA TTAAAATTAA GGGCAAGTTA CGGTGTGGCA
GGTAACAACC AGATCCCCAA TTATGGCTCG AGTAGTTTGC TTGGTCAGGG CAATTATGTT
CAGGGTGATG CGCTTGCCAG TGGTCTGATT ACCCTTAATA TCAATAATAA AGACTTAAAA
TGGGAGAAAA CGACCCAGCT GAACCTGGGG CTTGACCTTG GTCTCTTCAG CAACCGGTTG
AACTTTTCGG CAGAGTACTA CAAGTCCATT ACCAAAGACA TGCTCTTGAA TGTGCCTGTA
CCTGATATTT CTGGATTTGG AACACAACTT ACCAATATTG GTAAGATGCA GAACGCAGGG
GTAGAACTGA ACGTCAATAC TAAAAATTTT ACGGGTGACT TTAAATGGAG TACGGACTTT
AATTTCTCCC ATAATAAAAA CAAGGTGCTT CAATTGGGGC CTAACAATGC GCCGATCTAT
TTTACAGATA ATGAAACGAT GGTAAAAACG GAAGTTGGAC AGCCAATCTC AAATTTTTAC
GGCTATAAGT TCGATGGAGT ATACCTCAAC CAGGCGCAAA TTAACAACAG CGTTCATGAA
GCCAGTACCG TTCCGGGTGA TCCGATCATA CGGGATGTGA ATGGCGATGG TAAAATAACA
ACCGACGACA GAACAGTTAT CGGTAATTAC CAGCCTAAGT TCACCGCGGG TATCGTCAAT
ACCTTTTCTT ATAAAGGAAT AGAGTTATCC TTCATGTTCC AGGGATCTTA TGGCGGAGAG
ATTGTGAACC AGAATTATAG GTTCCTGGGG TACTGGAACA GCGGCAGAAA CCTTTATGCA
AAAGTAAACA ATTATTATAG ATCCGAGGCT GAACCTGGCG ATGGCGTCAA CCCAAGGCCA
ACTATGGTCC GCAAAGCCTT TCAATCTGCA TTCTCTACTT TATGGGTGGA AGATGCTTCT
TACCTGAGGC TAAAGAATAT TAACGTTTCT TATGCCCTGC CGGAAAGGCT GTTAAAGGGT
ACCTCTCTAA AAACATTGCG TATTTACGCA AACGCAGACA ATGTTTACTT ATGGAGCAAG
TACACGGGGT ATGATCCGGA AAACACCACT TTCAGCGCCA CCTCTTATTC TTCCAATGGT
ACGGCTGCCA ATTCGGGTAC AGTTTCCTCA GCAACCCCTC CGGGTGCACT GATCGGACTG
GATTATGGTT CTTATCCGGT ACCACGTGTG ATTACAGTTG GCTTAAGGGC CAGTTTTTAA
|
|---|
| Protein sequence | MIEENNKQLF IKAIRKLALM MGLLITAMQL YAGVRVEPGL VNGPTVLFAD IKVSGRVSDD
KGLGLPGVSV KLKGTNTGTV TDAKGNYSLI VPDNGILVFS FTGTITKEVQ VNNQKTIDVK
LAEDVKTLNE TVVIGYGTQS KKAVTGSVAS IGYDKFKDRS YSNVTQSLAG QVAGVNISQG
QGAPGVAPII RIRGVSSITA GTNPLFVVDG VPLENFNLNL INSQDIASVE VLKDASSAAI
YGSRGASGVI LVTTKMGKSG KTDINVNLEY GSQKVARMID MMDAQQWIQY YILAKNNSWT
DLGGGRKASD PNSLRGNAST YKIPEEFINS PEQFGKGTDW QDVMFRVAPM KSGQLSVSGG
TDKTQFLFSA SYLDQDAVLD QNYYKRLSLR SNVKHNVSDK FTLGMNLSFT GIYDRTDGTQ
GKSDVIGLAL QSDPFFPLYN ENGNLGMADP NSIWNRYLQY NPVNLWHPYA TTRFTDKQNK
AFNTLAIGYA EYKILNNLKF RTSLNGNLGN NRYNYYLIKN QGYGFNQSLT PSTGTASSGY
LLNWLNENTL NYDLKVKDHT FNVLAGYTVQ KQHDEFQSAT ATNFPNDLVH TLNAGTVTSG
TSTISEWSMI SYLARLNYNY KNRYFLTSTI RRDGSSRFGI NNKWGYFPSV SGAWIASDES
FLANIKTISL LKLRASYGVA GNNQIPNYGS SSLLGQGNYV QGDALASGLI TLNINNKDLK
WEKTTQLNLG LDLGLFSNRL NFSAEYYKSI TKDMLLNVPV PDISGFGTQL TNIGKMQNAG
VELNVNTKNF TGDFKWSTDF NFSHNKNKVL QLGPNNAPIY FTDNETMVKT EVGQPISNFY
GYKFDGVYLN QAQINNSVHE ASTVPGDPII RDVNGDGKIT TDDRTVIGNY QPKFTAGIVN
TFSYKGIELS FMFQGSYGGE IVNQNYRFLG YWNSGRNLYA KVNNYYRSEA EPGDGVNPRP
TMVRKAFQSA FSTLWVEDAS YLRLKNINVS YALPERLLKG TSLKTLRIYA NADNVYLWSK
YTGYDPENTT FSATSYSSNG TAANSGTVSS ATPPGALIGL DYGSYPVPRV ITVGLRASF
|
|---|
| |