Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0517 |
Symbol | |
ID | 8251604 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 623244 |
End bp | 626483 |
Gene Length | 3240 bp |
Protein Length | 1079 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644934167 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003090803 |
Protein GI | 255530431 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00691283 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTGAAG AAAATAATAA GCAGCTTTTT ATAAAAGCTA TACGCAAGCT GGCCCTGATG ATGGGTTTAC TGATAACTGC CATGCAGCTG TATGCAGGTG TACGTGTTGA ACCTGGTTTG GTTAATGGGC CTACAGTTCT TTTTGCGGAT ATAAAAGTGA GCGGACGCGT ATCTGATGAT AAAGGTTTAG GTCTGCCTGG TGTAAGTGTA AAGCTTAAAG GTACAAATAC CGGAACGGTA ACAGATGCAA AAGGGAATTA CAGTTTAATT GTACCGGATA ATGGTATTTT GGTATTCAGT TTTACAGGTA CCATAACCAA AGAGGTACAG GTTAATAACC AGAAAACTAT TGATGTTAAA CTGGCAGAAG ATGTGAAAAC ATTAAATGAA ACCGTAGTAA TAGGCTATGG AACCCAGTCT AAAAAAGCAG TTACAGGTTC TGTGGCCTCT ATTGGTTACG ATAAATTTAA AGACCGTTCT TATTCCAACG TTACCCAATC CCTTGCCGGA CAGGTAGCAG GTGTAAACAT CAGTCAGGGC CAGGGCGCAC CCGGCGTAGC TCCAATCATC CGGATCCGGG GTGTAAGTTC GATTACCGCT GGTACCAACC CGCTTTTTGT AGTGGATGGT GTACCACTGG AAAATTTTAA CCTCAACCTG ATCAATTCCC AGGACATTGC TTCAGTAGAA GTACTAAAGG ATGCTTCCTC TGCAGCTATT TATGGATCAA GGGGTGCCAG TGGGGTTATC CTTGTTACTA CCAAAATGGG AAAATCGGGT AAGACTGACA TCAATGTTAA CCTGGAATAC GGCAGCCAAA AAGTAGCGCG GATGATCGAT ATGATGGATG CCCAGCAATG GATCCAATAC TACATTCTGG CTAAAAACAA CTCCTGGACG GATCTGGGGG GTGGCAGAAA GGCTTCTGAC CCAAATAGCT TGAGGGGAAA TGCTTCTACG TATAAAATTC CTGAAGAATT TATCAATAGT CCGGAGCAGT TCGGGAAAGG TACAGACTGG CAGGACGTGA TGTTTAGGGT GGCCCCGATG AAAAGCGGGC AGTTGTCCGT TTCTGGGGGT ACAGACAAAA CACAATTCCT CTTCTCGGCT TCTTATTTAG ACCAGGATGC GGTACTCGAC CAAAATTATT ATAAGCGTTT ATCCTTGCGC TCAAATGTAA AACACAATGT GTCTGACAAA TTTACCCTTG GCATGAACCT GAGCTTTACC GGGATTTACG ACCGTACTGA CGGCACCCAG GGAAAAAGTG ATGTAATTGG CTTAGCCCTG CAAAGCGACC CGTTTTTTCC ATTGTACAAT GAAAATGGAA ATCTGGGAAT GGCCGACCCT AACTCCATCT GGAACCGCTA CCTGCAATAT AATCCGGTCA ATTTATGGCA CCCTTATGCC ACCACCCGGT TTACCGATAA GCAAAATAAA GCCTTCAATA CGCTGGCCAT CGGTTATGCA GAATATAAAA TACTCAATAA CCTGAAGTTC CGCACCAGTT TAAACGGAAA CCTGGGCAAC AATCGGTACA ACTATTACCT GATCAAAAAC CAGGGATATG GGTTCAACCA ATCGCTGACA CCTTCTACAG GAACGGCATC CAGTGGCTAC CTGCTCAACT GGTTAAATGA GAATACCCTG AACTACGATC TGAAAGTTAA AGATCATACC TTCAATGTGC TTGCAGGGTA TACCGTTCAG AAACAACACG ATGAGTTCCA GTCGGCCACG GCAACCAATT TTCCTAACGA TCTGGTCCAT ACCTTAAATG CAGGCACTGT CACCTCCGGA ACCTCTACCA TCTCTGAATG GTCGATGATC AGTTACCTGG CTCGTTTGAA TTACAACTAC AAAAACAGGT ACTTTTTAAC TTCCACTATC CGAAGAGATG GCAGTTCCCG TTTTGGTATC AACAACAAAT GGGGTTATTT CCCATCGGTA TCCGGTGCAT GGATTGCATC TGACGAAAGT TTCCTGGCAA ACATCAAAAC AATTTCCTTA TTAAAATTAA GGGCAAGTTA CGGTGTGGCA GGTAACAACC AGATCCCCAA TTATGGCTCG AGTAGTTTGC TTGGTCAGGG CAATTATGTT CAGGGTGATG CGCTTGCCAG TGGTCTGATT ACCCTTAATA TCAATAATAA AGACTTAAAA TGGGAGAAAA CGACCCAGCT GAACCTGGGG CTTGACCTTG GTCTCTTCAG CAACCGGTTG AACTTTTCGG CAGAGTACTA CAAGTCCATT ACCAAAGACA TGCTCTTGAA TGTGCCTGTA CCTGATATTT CTGGATTTGG AACACAACTT ACCAATATTG GTAAGATGCA GAACGCAGGG GTAGAACTGA ACGTCAATAC TAAAAATTTT ACGGGTGACT TTAAATGGAG TACGGACTTT AATTTCTCCC ATAATAAAAA CAAGGTGCTT CAATTGGGGC CTAACAATGC GCCGATCTAT TTTACAGATA ATGAAACGAT GGTAAAAACG GAAGTTGGAC AGCCAATCTC AAATTTTTAC GGCTATAAGT TCGATGGAGT ATACCTCAAC CAGGCGCAAA TTAACAACAG CGTTCATGAA GCCAGTACCG TTCCGGGTGA TCCGATCATA CGGGATGTGA ATGGCGATGG TAAAATAACA ACCGACGACA GAACAGTTAT CGGTAATTAC CAGCCTAAGT TCACCGCGGG TATCGTCAAT ACCTTTTCTT ATAAAGGAAT AGAGTTATCC TTCATGTTCC AGGGATCTTA TGGCGGAGAG ATTGTGAACC AGAATTATAG GTTCCTGGGG TACTGGAACA GCGGCAGAAA CCTTTATGCA AAAGTAAACA ATTATTATAG ATCCGAGGCT GAACCTGGCG ATGGCGTCAA CCCAAGGCCA ACTATGGTCC GCAAAGCCTT TCAATCTGCA TTCTCTACTT TATGGGTGGA AGATGCTTCT TACCTGAGGC TAAAGAATAT TAACGTTTCT TATGCCCTGC CGGAAAGGCT GTTAAAGGGT ACCTCTCTAA AAACATTGCG TATTTACGCA AACGCAGACA ATGTTTACTT ATGGAGCAAG TACACGGGGT ATGATCCGGA AAACACCACT TTCAGCGCCA CCTCTTATTC TTCCAATGGT ACGGCTGCCA ATTCGGGTAC AGTTTCCTCA GCAACCCCTC CGGGTGCACT GATCGGACTG GATTATGGTT CTTATCCGGT ACCACGTGTG ATTACAGTTG GCTTAAGGGC CAGTTTTTAA
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Protein sequence | MIEENNKQLF IKAIRKLALM MGLLITAMQL YAGVRVEPGL VNGPTVLFAD IKVSGRVSDD KGLGLPGVSV KLKGTNTGTV TDAKGNYSLI VPDNGILVFS FTGTITKEVQ VNNQKTIDVK LAEDVKTLNE TVVIGYGTQS KKAVTGSVAS IGYDKFKDRS YSNVTQSLAG QVAGVNISQG QGAPGVAPII RIRGVSSITA GTNPLFVVDG VPLENFNLNL INSQDIASVE VLKDASSAAI YGSRGASGVI LVTTKMGKSG KTDINVNLEY GSQKVARMID MMDAQQWIQY YILAKNNSWT DLGGGRKASD PNSLRGNAST YKIPEEFINS PEQFGKGTDW QDVMFRVAPM KSGQLSVSGG TDKTQFLFSA SYLDQDAVLD QNYYKRLSLR SNVKHNVSDK FTLGMNLSFT GIYDRTDGTQ GKSDVIGLAL QSDPFFPLYN ENGNLGMADP NSIWNRYLQY NPVNLWHPYA TTRFTDKQNK AFNTLAIGYA EYKILNNLKF RTSLNGNLGN NRYNYYLIKN QGYGFNQSLT PSTGTASSGY LLNWLNENTL NYDLKVKDHT FNVLAGYTVQ KQHDEFQSAT ATNFPNDLVH TLNAGTVTSG TSTISEWSMI SYLARLNYNY KNRYFLTSTI RRDGSSRFGI NNKWGYFPSV SGAWIASDES FLANIKTISL LKLRASYGVA GNNQIPNYGS SSLLGQGNYV QGDALASGLI TLNINNKDLK WEKTTQLNLG LDLGLFSNRL NFSAEYYKSI TKDMLLNVPV PDISGFGTQL TNIGKMQNAG VELNVNTKNF TGDFKWSTDF NFSHNKNKVL QLGPNNAPIY FTDNETMVKT EVGQPISNFY GYKFDGVYLN QAQINNSVHE ASTVPGDPII RDVNGDGKIT TDDRTVIGNY QPKFTAGIVN TFSYKGIELS FMFQGSYGGE IVNQNYRFLG YWNSGRNLYA KVNNYYRSEA EPGDGVNPRP TMVRKAFQSA FSTLWVEDAS YLRLKNINVS YALPERLLKG TSLKTLRIYA NADNVYLWSK YTGYDPENTT FSATSYSSNG TAANSGTVSS ATPPGALIGL DYGSYPVPRV ITVGLRASF
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