| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0506 |
|---|
| Symbol | |
|---|
| ID | 8251593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 612151 |
|---|
| End bp | 613239 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644934156 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003090792 |
|---|
| Protein GI | 255530420 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3934] Endo-beta-mannanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.440282 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACC TAAAAACCTA TCTATCACTG CTGATATTTG TCCTGATTTT TCAGGCCTGT
GCGCAAAAGC AAACCGGACA AACAGATCAA AAACCAAGAG AAATATGGAC GGTAGAAAAA
GCTAACAAAT GGTATGAACA ATGGGGATGG CTGCGTGGAG CGGATTTTAT TCCGAGTACA
GCAATTAACC AGCTTGAAAT GTGGCAAAAA GAAACTTTTG ATGCGGCTAC AATAGACCGG
GAACTTGGGT TTGCAGAAGG TATAGGAATG AATTCTATGC GGGTATATCT GCATCATGCG
GCCTGGCAGC AAGACAGGGA GGGTTTTAAA GAAAGAGTAA AAACCTATCT GGATATTGCC
GATAAGCACC ATATTTCTAC CTTGTTTGTG CTGTTTGACG ATTGCTGGAA CCCAACCTAT
AAAACAGGTA CGCAGCCTGC GCCTAAGCCA GGTATACACA ATTCGGGCTG GGTTAGGGAT
CCGGGAGATC TTTATCATCA GGACCCTAAA TTGGTGGATA CGCTGGAAGT TTATGTGAAG
GATATCCTGA CCAGTTTTAA AGATGATAAA CGCATTGTGC TATGGGACCT TTACAATGAA
CCTGGTAATT CAGGTTATGG CAATAAGAGC ATGGACCTGC TTAAAAAAGT ATTTGAATGG
GGACGTACCG TTGATCCTAG TCAGCCACTT TCTGTAGGGG TATGGAAGCG TGACCTGAAA
GAACTTTCAG ATTACCAGAT CCAGAATTCT GATGTCACCA CATATCACAA TTATGGAGAT
CCTAAAGACC ACCAGTTTTG GATTGATACC CTCAGAAGCG TATCTAAACG ACCACTGATC
TGTACGGAAT ATATGGCCAG AACAAGAAAT AGTCTGTTCA GCAATATTAT GCCTTTGCTT
AAAAAAGAAA ATATAGGCGC TTATAACTGG GGCTTGGTAG CGGGCAAAAC CAACACCAAA
TATGCCTGGG ACACTCCTCT GCCCAATGGT GATGAACCAA AAGTTTGGTT CCATGATATA
TTTAATCCTG ATGGAACACC TTATAAAAAG GATGAGATCG ATCTGATCAA GTCACTAACG
GGAAAATAA
|
|---|
| Protein sequence | MKDLKTYLSL LIFVLIFQAC AQKQTGQTDQ KPREIWTVEK ANKWYEQWGW LRGADFIPST
AINQLEMWQK ETFDAATIDR ELGFAEGIGM NSMRVYLHHA AWQQDREGFK ERVKTYLDIA
DKHHISTLFV LFDDCWNPTY KTGTQPAPKP GIHNSGWVRD PGDLYHQDPK LVDTLEVYVK
DILTSFKDDK RIVLWDLYNE PGNSGYGNKS MDLLKKVFEW GRTVDPSQPL SVGVWKRDLK
ELSDYQIQNS DVTTYHNYGD PKDHQFWIDT LRSVSKRPLI CTEYMARTRN SLFSNIMPLL
KKENIGAYNW GLVAGKTNTK YAWDTPLPNG DEPKVWFHDI FNPDGTPYKK DEIDLIKSLT
GK
|
|---|
| |