| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0482 |
|---|
| Symbol | |
|---|
| ID | 8251569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 577579 |
|---|
| End bp | 578304 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644934132 |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_003090768 |
|---|
| Protein GI | 255530396 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAACA TCCATATACC TCCTGTAGTA AAGAACCTGC TGATTATAAA TGTAATTTTT
TATGCGGCTA TGTTCATGTT CAGAGATGGA CAGGGTAATT ATTTACTTGT AGAAAAACTC
TCTGTATTTT ACTTTGATTC GCCCCATTTT AAAATCTGGC AGCCCATTAC CTATATGTTT
ATGCATAGCC CCGGAACTTT TATGCATATC TTTTTTAACA TGTTTGCCGT TTTTATGTTT
GGAGGGGTAC TGGAAGCCAG GTGGGGGGCA AAGCGGTTTT TGAACTTTTA CCTGATCACT
GGTCTTGGTG CATTGGGCCT GCAATGGGCA GTACAAGCTT TTGAAGTGCA CCAGATTGTT
GGTACTGCCA TTCCCGGAGA GGCGCTTTTC CAGATGAAAA ATTTTACACA GGCACAGGCA
GAAACATTAA TGGGCATTTA CAACGGCCCA ATGTTGGGTG CATCCGGAGC CGTATTTGGT
TTGCTGGTGG CATTTGGGAT GTTATATCCA AATACCGAGC TCTATATTAT GTTTATTCCC
ATTCCGATAA AAGCCAAATA CATTATCCCG GTATACATCA TTTTTGAGCT TACCATGGGT
GTAGCACAGG TACAGGGCGA CTCGGTAGCA CACTATGCCC ATTTGGGGGG TGCATTAATT
GGCTTTATTT TGGTTAAGCT TTGGGGAGAT AAAAATAACG ATAGATTTTA TACCTACTAT
GAATAA
|
|---|
| Protein sequence | MNNIHIPPVV KNLLIINVIF YAAMFMFRDG QGNYLLVEKL SVFYFDSPHF KIWQPITYMF
MHSPGTFMHI FFNMFAVFMF GGVLEARWGA KRFLNFYLIT GLGALGLQWA VQAFEVHQIV
GTAIPGEALF QMKNFTQAQA ETLMGIYNGP MLGASGAVFG LLVAFGMLYP NTELYIMFIP
IPIKAKYIIP VYIIFELTMG VAQVQGDSVA HYAHLGGALI GFILVKLWGD KNNDRFYTYY
E
|
|---|
| |