Gene Phep_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0316 
Symbol 
ID8251401 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp368348 
End bp369049 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content41% 
IMG OID644933964 
Producthypothetical protein 
Protein accessionYP_003090602 
Protein GI255530230 
COG category[S] Function unknown 
COG ID[COG3506] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.385756 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACACAA TATTTTCTAG ACACTTTGCG GTCATTATAG CTTTTACCGC AGTATGTTCT 
TTGGCGCAGT TTTCCTTTGG ACAAGCCCCG GGGCTCAATT TGAAAAATCA ACCAAACATT
GCTTTTAGGC AGGACACTAC TATGTATTGG GAAAACAAAC CGGAAACCTA TACAGTCAAG
GGAAAATCGG TTACCATGCG TACCAATAGT GCAAAATACC TTTGGGGAGA TAGTCACGAA
TTTGATTTTG ACTTTCCATA TTCTCATTCC TACTACCGGA ATATAGCTGG CAATTTCACG
GCACAGACAA CAGTAATGCT AACAGACGAC TGGAAAAACG GGAACGCTGG CTTGCTTATT
AAGTTATCGC AATCGAATTG GATAAAGCTG TACATAATCA AAGAAACGAA TGTGCTGCGC
CTCAATACCG TTTATGCCAG TGATGCAACC CATATAGATT ATTCTACTTC TCTGCTCCAT
TCCAACGATA ATAAGATATG GTTACAGGTA AGCTGTAACA ACGGAGTGCT TCGCTTAAAA
TGTTCCACCA ACGGACGGGC ATACGAAACG GTCCGTATTT TAAATATGCC AGCAGGTTAT
AAGTCTGCAC AGGTAGGCTT AATGGCAGAC TCTCCAATGT CATCAGGCTT CGATGCTTCA
TTTGAGAACC TTAGTATTCG CAATATAGCA GAAGATCAAT AA
 
Protein sequence
MYTIFSRHFA VIIAFTAVCS LAQFSFGQAP GLNLKNQPNI AFRQDTTMYW ENKPETYTVK 
GKSVTMRTNS AKYLWGDSHE FDFDFPYSHS YYRNIAGNFT AQTTVMLTDD WKNGNAGLLI
KLSQSNWIKL YIIKETNVLR LNTVYASDAT HIDYSTSLLH SNDNKIWLQV SCNNGVLRLK
CSTNGRAYET VRILNMPAGY KSAQVGLMAD SPMSSGFDAS FENLSIRNIA EDQ