Gene Phep_0302 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0302 
Symbol 
ID8251387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp351891 
End bp352427 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content39% 
IMG OID644933951 
Productprotein of unknown function DUF420 
Protein accessionYP_003090589 
Protein GI255530217 
COG category[S] Function unknown 
COG ID[COG2322] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00015964 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACAGCAA ATAACAATTC AGTTGAACAG AAATATAATA AATGGATCAT TTTGTTATCT 
ATTGTTATCC CGGTAGCCGT AGCGGTATTG TTCTATGTTA AAATCCCCAA TGCAAGCCCT
TTGCCCTTTT TGCCCCCAAT TTATGCGACC ATAAATGGCA TTACCGCGGT ATTGCTGGTG
ATGGCCGTAA TGGCGGTTAA GAAGGGAAAA CGGAAACTGC ATGAGAACTT AATGAAGCTT
GCCATTGGCT GTTCGTTATT GTTCCTGGTC ATGTATATCG CTTATCACAT GACCACCCCA
TCTACAAAGT TTGGCGGAGA AGGTACCATC AAATATGTTT ATTATTTTGT TCTACTGACA
CACATACTTT TATCTATTGT CATCATACCC CTGGTGCTGA TCACTTATGT AAGGGCTTTG
GCCGAACGTT TTGATAAGCA TAAAAAAATT GCAAAGATCA CTTTTCCACT CTGGTTGTAT
GTTGCAGTTA CTGGTGTTGT AGTATACCTG ATGATCTCTC CTTATTATAA TTTTTAG
 
Protein sequence
MTANNNSVEQ KYNKWIILLS IVIPVAVAVL FYVKIPNASP LPFLPPIYAT INGITAVLLV 
MAVMAVKKGK RKLHENLMKL AIGCSLLFLV MYIAYHMTTP STKFGGEGTI KYVYYFVLLT
HILLSIVIIP LVLITYVRAL AERFDKHKKI AKITFPLWLY VAVTGVVVYL MISPYYNF