Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0253 |
Symbol | |
ID | 8251338 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 295823 |
End bp | 296431 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 644933903 |
Product | RNA polymerase sigma-70 factor |
Protein accession | YP_003090541 |
Protein GI | 255530169 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.83737 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAGGG AGTATGCGCG TCTTAATGAA GAAGATCAAA AGCTGGTTAA CGCAATTGTG CAGCGCGATA AAAAGCTGTT TGAAGTGCTC TATAAAAAAT ATTATCAGCA GTTATTTGCT GTGGCCTACC GCTATGTAGG CCAGGCAGAA ATTGCAGAAG AGATTGTTCA TGATGTGTTT ATAACTATAT GGAATAAAGC AGATCAGTTA AATATTCAAC ATTCAATGAA AAGTTATTTG TTTAAATCGA TCGTAAATTC ATCCCTGAAC TTTATTAAAA AAGAGAAGGT CCAGGCAGAA AAACAGCAGG TATATATGGC CATAGTAGAT AAAGAAACTG CTGATGAACC GGATACGGAT AGGGAGGAAG CACTGCTTAA AGACCTTGCA CAGGCACTGG AACTGCTGCC CGATAAATGC AGACAAGTGA TGTACCTGAG CCGTTTCGGG AAACTGAAAC AACAGGAGAT TGCCACACAG ATGAACATCT CCATTAAAAC AGTGAAAAAT CACCTCACTT ACGGTTTTCA AAAGTTAAGG GAACAGCTTG AGAAACGAAA ACATATTGCA ATTGTGCTGT TCCTGCTTTT AAACATTTTA ACGCCTTAA
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Protein sequence | MEREYARLNE EDQKLVNAIV QRDKKLFEVL YKKYYQQLFA VAYRYVGQAE IAEEIVHDVF ITIWNKADQL NIQHSMKSYL FKSIVNSSLN FIKKEKVQAE KQQVYMAIVD KETADEPDTD REEALLKDLA QALELLPDKC RQVMYLSRFG KLKQQEIATQ MNISIKTVKN HLTYGFQKLR EQLEKRKHIA IVLFLLLNIL TP
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