| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0248 |
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| Symbol | |
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| ID | 8251333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 290844 |
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| End bp | 292079 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644933898 |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_003090536 |
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| Protein GI | 255530164 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATAC AGGACATTAA AAACCGTTTC GGGATTATAG GAGGCTCTCC GCTGCTGAAC
CGGGCAATAG ATATAGCCAG ACAGGTTGCA CCAACCGATA TGTCTGTATT GATTACCGGC
GAAAGTGGTA GTGGTAAAGA GGTTTTCTCT CATATTATCC ATCAGATGAG CACCCGGAAA
CATGGGGCAT TTATTGCCGT AAACTGCGGT GCCATACCGG AAGGAACCAT AGGCTCGGAA
TTGTTTGGTC ATGAAAAAGG TTCTTTTACC GGTGCTCATG AAGCCCGTAA GGGTTATTTT
GAGGTGGCCA ATGGAGGTAC GATCTTTTTA GATGAAGTGG CAGAATTGCC ATTAGGCACC
CAGGCGCGTT TACTCAGGAT ATTAGAAAGT GGCGAATACC TGAGGGTAGG ATCGTCAAAA
GTACAAAAAA CAGATGTACG GATCATTGCA GCCACCAACG TAGATGTATA CAACAGGGTA
AAATCGGGTA AGTTCCGTGA AGACCTTTAC TACAGGCTAA ACACGGTTCC TTTGCGGATC
CCTGCACTGC ATGAACGTAA AGAAGACATT TACCTGCTGT TCAGAAAGTT TTCTGCCGAC
TTTAGCGATA AGTATAGAAG TCCGGGTATA CAGCTGGAGC CGGATGCCAT ACAGATGCTG
AGCAATTACA GCTGGCCCGG AAACGTAAGG CAGCTGAAAA ATATAGCCGA ACAGATCTGC
GTGCTTGAAA AAGACCGGAA CGTAACCGCA GCAGCCCTGC TGAACTATAT CCCTAATGAA
AGCGGGAGCA ATCTGCCAAT GGCGATCAGC AATGGTGGCA GTAAAGATGA TTTTTCTGAA
CGGGATATTC TTTACAAGGT GCTTTTTGAC ATGAAAAAGG ACATGATGGA ACTGAAAAAA
CTGGTTGCTG AAATTATACA AAGCGGGGGC AATACCTCTC ATGTGATTGC CGACAATCCA
CATTACATCA ATCAGCTTTA CCAGGATGTG GACCAGACAA TGAACCATGA GGCGACCCTG
ACCATTAAAA ACCCTTTACA AAACTCCCCC TCAGAATATA ACTATACGCA GGATGCAGAG
GAAGTTGAAG AATCATTGTC GCTGATCGAC AAAGAATCAG ACCTGATCAA AAAAGCTTTA
AAAAAGCACA AGGGCAAGCG CAAATTTGCT GCACAGGAGC TGGGTATCTC GGAACGTACA
TTATACAGGA AAATTAAGGA ACTGAACTTA AACTAG
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| Protein sequence | MDIQDIKNRF GIIGGSPLLN RAIDIARQVA PTDMSVLITG ESGSGKEVFS HIIHQMSTRK
HGAFIAVNCG AIPEGTIGSE LFGHEKGSFT GAHEARKGYF EVANGGTIFL DEVAELPLGT
QARLLRILES GEYLRVGSSK VQKTDVRIIA ATNVDVYNRV KSGKFREDLY YRLNTVPLRI
PALHERKEDI YLLFRKFSAD FSDKYRSPGI QLEPDAIQML SNYSWPGNVR QLKNIAEQIC
VLEKDRNVTA AALLNYIPNE SGSNLPMAIS NGGSKDDFSE RDILYKVLFD MKKDMMELKK
LVAEIIQSGG NTSHVIADNP HYINQLYQDV DQTMNHEATL TIKNPLQNSP SEYNYTQDAE
EVEESLSLID KESDLIKKAL KKHKGKRKFA AQELGISERT LYRKIKELNL N
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