Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0242 |
Symbol | |
ID | 8251327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 280557 |
End bp | 286520 |
Gene Length | 5964 bp |
Protein Length | 1987 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644933892 |
Product | PKD domain containing protein |
Protein accession | YP_003090530 |
Protein GI | 255530158 |
COG category | [R] General function prediction only |
COG ID | [COG3291] FOG: PKD repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAAAAC GTTTACTCTT TTTTACATTT GCTCTCCTAT TTCTTCAAAT ATCTGAGGCT TTTTCTCAGA TAACGATTGG AACGGTTGAC GCTGGACCTT ATACACCAGG ATCGAGTATT GCGGCAACTT TTAGTATAAA TCCGACAACC TGTATCAATC GTGACAATCA GTTTGATTTG GTGTTAGTAT CACCTGCAGG AGTAGAACTT AGTACAATTG GAAGTTATAC TGGTTTTTAT ACTACATTTA TAAATGGGAC AATACCTCAA GGAACATTAC CAGGAACAGG TTACAAGCTT AGAATTAAAA CGACTAGTCC CGTTCTAACA CCTATTGCTG AATCAAATAC TTTTGAAATT AAGACAGGTA CAGCTATTAC TGCCGCGGTA AGTTCAGCAC CAGTGATAAC CGCCCCTTAC ATATTTGGTT ATTGTCCGGG CAGGCCCAAT GCTGTTTTTA ACTTCACGAA CCAATCCACA GCTACGAGTA CGGTAACCGG TACGATTAAA AATGAACTGA GTGGTTCAAT TGATGCAAAT CTAACTTTCA CTACCGCCAT ACAATCCTTT ACTGCTTCAT TCGCTCATTA TACAGTAAGT ATAAAGGCTC AAATGCCCGA TGGTACTATT GGGACAAGAG CTTACATGGT TATAAATAAT AATGTATTTA ACAACTTTTC CACTTCAGGA TCAAATGCAT TTGTTTGTTT ACCTGGAGGT TTTCTCCAGT ATGGTGTAGA TGTAAACGGT CCAACCGGCA TCCAAAATAA CTACCCTGGT AATACCTACC AAATAATGTG GGGAGATGGC GTTACAGATA CTTATACATT TTGCGATTTA AAATCGGGAT CAGTTCAACA TGAATATTTG AGATCTTCTT GTGGAAATCC CCCCTATAGT ACAGGAGGGG GGACAGTTTA TAACGTCTTT GGCATTAACA TCTCTGTTGT AAGTCCTTGC GGACAAGTTG GCGGAGCCAT ATCAACTTAT GTTAGAGTTG TTGATAAACC CGTAAATAAA TTTTCCCACC CCGCTGCTGC TTGTACGGGC AGGCCAGTAA CTTTTGTGAA CAACTCGATA TTGGGACAAG ACCCCGGATC CAATTCACAG GTCTGCAGCA ATAATAATGT GACTTACAAC TGGTATGTTG ACGGACAAAT TGTTCTGGCA GGCGTACCAA GATCTACCAA TTTAGTTCAT ACTTTTCCTA CCCATGGAGT TCATGATGTA AAATTGGAGT CGGTAACAAG TGGCTCTTGT GAAGGTGCCG CCATAACGCA GCAAATCTGT ATTCAGGATC CTCCACAGCC AGCGTTTGAT TTCAATGGGG CTCCACAAAC AGGATGTGCA CCATTTACCA TTCAGGCAAG GGACCTCTCT GTTATAGATA ACATTTGTAA TGCAAACAAC GCTTACAACT GGATTGTAAA TGGCCCAGCA GGTGTACAAA TTACAAATCA AGGAGATAAA AATCCTATTT TCAAGTTTAA TAATCCGGGA ACCTATACCA TCATTCTGGA AATTCAGACT GCATCTTGTG GAACTGTAAG AACACAGATA CCACAGCAAA TTGTATTGGC AGACGGAGCT CCGGTTGCCA CATTATCCGA TAATGTAACA TTATGTGCCT TAAACACTTT TACCTTTGAC AATAATACCG GTCCTACAAG AACCATTCTT ACAGGAACAC AACAGGACTT GGCTACTACA TATACCTGGT CTGTTACGGA AAGCGATGGT AGCGCTCTTG CGCCTGGAGA CTTTAGTTTT GAGGGCGGTA CTGATTTGCA CACCAAATTT CCAATTATTA AATTCAACCA GTTTAAAACC TACAGAATAA AGGTCGTACA CGTTAATAGC TGTGGACAAA CTGATGATTT CCAACTTATC ACTTTCTCTC CTTCACCAGT CCCTAATGTT GTCACCAATG CAAATCCTAT CTGTTATGAT GGGGTAATTA ATCTGCAGGG AAGCATTACT GGTGGGGCAT ATGCTTCATT TGAATGGGTA GGTAACGGCG GCAGTTTTTC ACCTGCAACG GGGAATTTGA CAACGACTTA TACGCCTAGC ATTGCCGAAA GAAATGCTGG TACAACAACA ATAATATTAA GAGTAAATAC TGGTTTGCAA GGTGCATGTG CAAGGGTTGA ATTCCCACTA GTGGTCAACA TCCGGCCGAA CAACACCGGT ACAAATGCAA CTCAACAGAT CTGTACAGGC AATACTGTTT CCCACACCCC TGCTTCAACT GTCGTCGGCA GTACATATAG TTGGACAGTG AGTAATCCAG ATGGAAATGC CACGGGTCAA CTTCCTGGAT CCGGAACTGC AATTACGGAT GTCATTATCA ACAATAGTGC TACAGCGAAT GCAGTTGTAA TCTATACTAT TACTCCACTT AGTAACGGCT GCTCCGGTGT GCCATATACT TTCACTGTTA CGATAACTCC AAGGCCTGTT CTGACAGCAA TAGCTGCCAA GTCAACAATT TGCAGTAATG AATCTTCAGC TATCACATTA AGCTCTAATT TACTAAATAC CAGATATACC TGGACAAGTT CCGTTACTGG TAATATTACA GGAAATAACA GTGTAAATAC GCAAACAGCA AACAGTATAA TCGATGATAT ACTAATTAAT AACAGTACCA CCCAAGGTTC AGTAACTTAT ACCATCACAC CATTCTCCGC TACGGGATGC CCAGGTACAC CGGTTTCTGT TACCGTAAAT GTAGATCCCG CATTAACAGT TGCCAATGCA GGGGCTGATA AAAGTATTTG TGCTACTACC AGCTATACGA TGGAAGGAAA TACGGCTAAT GTTGGCACAG GAACATGGAC ACCCGTATCA GCCAATGCCT CAGGTGTTAC CTTTGCTAAT CCCAATAGCC CTACTACAGT GGTTAACGGC CTAAGCCCTG GAAATAGCTA TACCTTCAGG TGGACAATTG ATGCCACAAG TGCCTGCAGC CCGACATTTG ACGAAGTTAC CATTACCGTT AACGAACCCA CCATACCAGG AACTACAGCT GGAACCCCAA CAATAGTTTG CGCCAATAAC AATACCGGAA CCATTTCCCT GAGTGGAAAT ATTGGCAATG TGATCAGATG GGAAAGCAGT CTGGATGGCA ATACCTGGAT CCCGATTGCA GGAAATAATA CTACTACGAC CTATACCTTT AATAACCTTA CCGTTTCTAC ACAATTTAGG GCTGTTGTTC AAAATGGCGG TTGTACAGTA GAAAATTCTA CCGGAACAAC CATCACAGTA TCCCCCGCAT CCACCATTGC AACTGCAGGT GCAGACCAGG TGCTGTGTAA TGAGCCGACT GCTACATTGG ATGGAAATAC TCCTGCTGCA GGTGAAACAG GGGTATGGAC ACATGCCTCT GGCAGTCCAA TTGCAGTCAT AACCGATCCT GCTAATCCCA AAACCACTGT AACTGGATTA ACACCAGGTC AAACTTATCG TTTCGTATGG ACTATAACAG GCAATGCGCC ATGCGGGCCA ACTTTTGACG ACGTTACCAT AAGAAACAAT CCACCAATTG TCCAGAACAT TAGCAGTACC AGTGCTGTGG TTTGTAACGG CCAGGAAGTA CTCCTTAATG GCAGTGCACC AACGGGCGGC GATGGAACTA ATTACACCTA TTCCTGGGAA ATTAAAGTAG ATACAGGGCC CTGGAATCTT ATAAATAATG CAACCGACAA AGACCTGATC ATTACCCTCA CTACGCCTGG AACGGTCAGC TTCAGGAGAA TCGTAACTAG CGGGGGTTGT ACTTCTACCA GCAATGAATA TTCCATTGTT GTTCAACCCG CAATAACAGG CAATAACATC TCCGCAGACC AAATTATCTG TAGTGGCACT ACACCTGCAT TACTTACTGG CCCTGCACCA ACAGGTGGCG GCGGAACATT TACCTATCAG TGGCAATCCA GTCCGGATGG AACGGTATGG ACAAACATTG GGGGTGCCAA TGACATAGAT TATCAGCCAA CAGCCCTTAC CACAACCACT TTTTACAGGC GTAATGCCAG CACCCTTGCC TGCGGGTCCC TGCAAGTTCC TAGTAATACA GTTAAAATAA CCGTTAACCC GAATGCAAAA GCCGAATTTA CCTGGACAAA CGACAAGGGT TGTGTTCCTT TTACCCTCCC TGTCACAGTA GTGCATTATG TAGATAGGAA TGCGACTTAC ACTTGGTACG CGAATACTAC AGTTATTGGA ACCGGCACAA CATTCCCTGT TTACACCATT CAGAACAGTA ATGAATCAGT GACGATCAGA CTGGTGGTAA CCAGTAGCCT GGGTTGTTCT CAGGATGAAT TCAGTCATGT ATTTAGTACC AACCAGGCTG TACCGGCATC ATTTACACAA AACACCACCG AAGGCTGCGG ACCATTACCT GTAAATTTTG TAAACACTTC TGACCTTACT GCAGGAGCAA CATTTTCATG GGATTTTGGC AATGGCACGA GCTCAACGCA AGCCAATCCG GGCACTGTAA CCTACCAGGC TGAAGCAACC GGAAAAGACA CGACTTATGT GGTAACCTTA ACCGCTACTA CTTCTTGCGG AAGTAATTCC GTTACTTCAA CCGTACTTGT AAAAGCAAAG CCCGTAGCCA TATTTTCACC AAGCAGAACA GATGGTTGTT CACCTATGCT TGTCAACTTT ACTAATACTT CTCCGGGTGG TGCAGGTACT ACTTATTTTT ATGATTTCGG CGATGGCAGC CCTGTTATAC AGCGACCGGA TAAATCTCCT GTACAACATA CCTACAATAC CACGGTAACC ACTACCTTCA GGGCCACGTT AACAGTTGTA AACGAATGTG GTACCGATAT CCGTGCGTAC AATATCCGTG TTGCTCCGCA AAACATTACG CCTGAACTGG TAGTTGATGC CAATGAAAAA GAAGGCTGCG CACCACATAC CGTCAATTTT GACAACAACT CTATTGGTGC ATCCCGGTTT ACATTTGATT TTGGCGATGG CAGTCCAATC CAGACTGTGC TAACCACCGG CAGGGTTCCC CATGTGTATA CTATGCCAGG CACATTCACC ATCACAATGA CCGCCTACAA CAGTTGCTCA GAAATCTCTA CTACAGAAAC CGTTACTGTT CTGCCCCAGC CAATTGCTGA TTTCGATGCA GTAAACAAAT TAGGTTGTAC CGGCCTTGCC GTTAAATTTA CAAACAACAC TCAAAACGGG GTTAGCTATC TATGGGATTT TGGAGACGGT TCTCCAACTT CTACAGAAGT TGAACCAACC CATGTCTATA CCGGCAGCCA GGAATACTAT ACCGTGACGC TTACAGCTGT AAACAACCTG GGCTGCCCAA TGACGGTTAC CAAAACCAAC TTCATCCACA TCGTACAACC TCCTGTTGCC GCCTTTAATG TCAACCCTTC TACCCTGATC AGCATTCCGG ATTATACCTT TAATTTCGAA GATCAGAGTA CCAATACCCC TACCATCTGG GAATGGGATT TTGGCGATGG CACCAGTTCG GCACTAAGAA ACCCGAGCCA TACCTACCTG GATACAGGCA CCTATAAAGT GACACTCAAG GTAACCAACC AGCAGGGCTG CTTTACCACT ACTTTTAAAA ATGTAACCAT TAAAGGTGTT CCGGGCTATT TATTTGTACC TAATTCTTTT ATACCGGGCG ATACACGTCC GGAGCTGCGG GAGTTCCGCG CCAAAGGATC GGGAATCGCT AACTGGCGCT TCAGCATCTT TAACAAATGG GGGCAACTGT TATGGGAAAC AACCAAGCTG GAAGAAGGCC GGCCTGCCGA AGGCTGGGAT GGCACATTTA AAGGGCAACC TATGCCTCAG GGAGTTTACT TCTGGAAAAT AGATGTGCAA ATGATCAATG GAACAGAATG GAAAGGCATG ACCTACGACA AATCTGTACC TAAACGAACA GGACCAATAC ATTTAATCAG ATAG
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Protein sequence | MVKRLLFFTF ALLFLQISEA FSQITIGTVD AGPYTPGSSI AATFSINPTT CINRDNQFDL VLVSPAGVEL STIGSYTGFY TTFINGTIPQ GTLPGTGYKL RIKTTSPVLT PIAESNTFEI KTGTAITAAV SSAPVITAPY IFGYCPGRPN AVFNFTNQST ATSTVTGTIK NELSGSIDAN LTFTTAIQSF TASFAHYTVS IKAQMPDGTI GTRAYMVINN NVFNNFSTSG SNAFVCLPGG FLQYGVDVNG PTGIQNNYPG NTYQIMWGDG VTDTYTFCDL KSGSVQHEYL RSSCGNPPYS TGGGTVYNVF GINISVVSPC GQVGGAISTY VRVVDKPVNK FSHPAAACTG RPVTFVNNSI LGQDPGSNSQ VCSNNNVTYN WYVDGQIVLA GVPRSTNLVH TFPTHGVHDV KLESVTSGSC EGAAITQQIC IQDPPQPAFD FNGAPQTGCA PFTIQARDLS VIDNICNANN AYNWIVNGPA GVQITNQGDK NPIFKFNNPG TYTIILEIQT ASCGTVRTQI PQQIVLADGA PVATLSDNVT LCALNTFTFD NNTGPTRTIL TGTQQDLATT YTWSVTESDG SALAPGDFSF EGGTDLHTKF PIIKFNQFKT YRIKVVHVNS CGQTDDFQLI TFSPSPVPNV VTNANPICYD GVINLQGSIT GGAYASFEWV GNGGSFSPAT GNLTTTYTPS IAERNAGTTT IILRVNTGLQ GACARVEFPL VVNIRPNNTG TNATQQICTG NTVSHTPAST VVGSTYSWTV SNPDGNATGQ LPGSGTAITD VIINNSATAN AVVIYTITPL SNGCSGVPYT FTVTITPRPV LTAIAAKSTI CSNESSAITL SSNLLNTRYT WTSSVTGNIT GNNSVNTQTA NSIIDDILIN NSTTQGSVTY TITPFSATGC PGTPVSVTVN VDPALTVANA GADKSICATT SYTMEGNTAN VGTGTWTPVS ANASGVTFAN PNSPTTVVNG LSPGNSYTFR WTIDATSACS PTFDEVTITV NEPTIPGTTA GTPTIVCANN NTGTISLSGN IGNVIRWESS LDGNTWIPIA GNNTTTTYTF NNLTVSTQFR AVVQNGGCTV ENSTGTTITV SPASTIATAG ADQVLCNEPT ATLDGNTPAA GETGVWTHAS GSPIAVITDP ANPKTTVTGL TPGQTYRFVW TITGNAPCGP TFDDVTIRNN PPIVQNISST SAVVCNGQEV LLNGSAPTGG DGTNYTYSWE IKVDTGPWNL INNATDKDLI ITLTTPGTVS FRRIVTSGGC TSTSNEYSIV VQPAITGNNI SADQIICSGT TPALLTGPAP TGGGGTFTYQ WQSSPDGTVW TNIGGANDID YQPTALTTTT FYRRNASTLA CGSLQVPSNT VKITVNPNAK AEFTWTNDKG CVPFTLPVTV VHYVDRNATY TWYANTTVIG TGTTFPVYTI QNSNESVTIR LVVTSSLGCS QDEFSHVFST NQAVPASFTQ NTTEGCGPLP VNFVNTSDLT AGATFSWDFG NGTSSTQANP GTVTYQAEAT GKDTTYVVTL TATTSCGSNS VTSTVLVKAK PVAIFSPSRT DGCSPMLVNF TNTSPGGAGT TYFYDFGDGS PVIQRPDKSP VQHTYNTTVT TTFRATLTVV NECGTDIRAY NIRVAPQNIT PELVVDANEK EGCAPHTVNF DNNSIGASRF TFDFGDGSPI QTVLTTGRVP HVYTMPGTFT ITMTAYNSCS EISTTETVTV LPQPIADFDA VNKLGCTGLA VKFTNNTQNG VSYLWDFGDG SPTSTEVEPT HVYTGSQEYY TVTLTAVNNL GCPMTVTKTN FIHIVQPPVA AFNVNPSTLI SIPDYTFNFE DQSTNTPTIW EWDFGDGTSS ALRNPSHTYL DTGTYKVTLK VTNQQGCFTT TFKNVTIKGV PGYLFVPNSF IPGDTRPELR EFRAKGSGIA NWRFSIFNKW GQLLWETTKL EEGRPAEGWD GTFKGQPMPQ GVYFWKIDVQ MINGTEWKGM TYDKSVPKRT GPIHLIR
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