Gene Phep_0242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0242 
Symbol 
ID8251327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp280557 
End bp286520 
Gene Length5964 bp 
Protein Length1987 aa 
Translation table11 
GC content44% 
IMG OID644933892 
ProductPKD domain containing protein 
Protein accessionYP_003090530 
Protein GI255530158 
COG category[R] General function prediction only 
COG ID[COG3291] FOG: PKD repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAAAAC GTTTACTCTT TTTTACATTT GCTCTCCTAT TTCTTCAAAT ATCTGAGGCT 
TTTTCTCAGA TAACGATTGG AACGGTTGAC GCTGGACCTT ATACACCAGG ATCGAGTATT
GCGGCAACTT TTAGTATAAA TCCGACAACC TGTATCAATC GTGACAATCA GTTTGATTTG
GTGTTAGTAT CACCTGCAGG AGTAGAACTT AGTACAATTG GAAGTTATAC TGGTTTTTAT
ACTACATTTA TAAATGGGAC AATACCTCAA GGAACATTAC CAGGAACAGG TTACAAGCTT
AGAATTAAAA CGACTAGTCC CGTTCTAACA CCTATTGCTG AATCAAATAC TTTTGAAATT
AAGACAGGTA CAGCTATTAC TGCCGCGGTA AGTTCAGCAC CAGTGATAAC CGCCCCTTAC
ATATTTGGTT ATTGTCCGGG CAGGCCCAAT GCTGTTTTTA ACTTCACGAA CCAATCCACA
GCTACGAGTA CGGTAACCGG TACGATTAAA AATGAACTGA GTGGTTCAAT TGATGCAAAT
CTAACTTTCA CTACCGCCAT ACAATCCTTT ACTGCTTCAT TCGCTCATTA TACAGTAAGT
ATAAAGGCTC AAATGCCCGA TGGTACTATT GGGACAAGAG CTTACATGGT TATAAATAAT
AATGTATTTA ACAACTTTTC CACTTCAGGA TCAAATGCAT TTGTTTGTTT ACCTGGAGGT
TTTCTCCAGT ATGGTGTAGA TGTAAACGGT CCAACCGGCA TCCAAAATAA CTACCCTGGT
AATACCTACC AAATAATGTG GGGAGATGGC GTTACAGATA CTTATACATT TTGCGATTTA
AAATCGGGAT CAGTTCAACA TGAATATTTG AGATCTTCTT GTGGAAATCC CCCCTATAGT
ACAGGAGGGG GGACAGTTTA TAACGTCTTT GGCATTAACA TCTCTGTTGT AAGTCCTTGC
GGACAAGTTG GCGGAGCCAT ATCAACTTAT GTTAGAGTTG TTGATAAACC CGTAAATAAA
TTTTCCCACC CCGCTGCTGC TTGTACGGGC AGGCCAGTAA CTTTTGTGAA CAACTCGATA
TTGGGACAAG ACCCCGGATC CAATTCACAG GTCTGCAGCA ATAATAATGT GACTTACAAC
TGGTATGTTG ACGGACAAAT TGTTCTGGCA GGCGTACCAA GATCTACCAA TTTAGTTCAT
ACTTTTCCTA CCCATGGAGT TCATGATGTA AAATTGGAGT CGGTAACAAG TGGCTCTTGT
GAAGGTGCCG CCATAACGCA GCAAATCTGT ATTCAGGATC CTCCACAGCC AGCGTTTGAT
TTCAATGGGG CTCCACAAAC AGGATGTGCA CCATTTACCA TTCAGGCAAG GGACCTCTCT
GTTATAGATA ACATTTGTAA TGCAAACAAC GCTTACAACT GGATTGTAAA TGGCCCAGCA
GGTGTACAAA TTACAAATCA AGGAGATAAA AATCCTATTT TCAAGTTTAA TAATCCGGGA
ACCTATACCA TCATTCTGGA AATTCAGACT GCATCTTGTG GAACTGTAAG AACACAGATA
CCACAGCAAA TTGTATTGGC AGACGGAGCT CCGGTTGCCA CATTATCCGA TAATGTAACA
TTATGTGCCT TAAACACTTT TACCTTTGAC AATAATACCG GTCCTACAAG AACCATTCTT
ACAGGAACAC AACAGGACTT GGCTACTACA TATACCTGGT CTGTTACGGA AAGCGATGGT
AGCGCTCTTG CGCCTGGAGA CTTTAGTTTT GAGGGCGGTA CTGATTTGCA CACCAAATTT
CCAATTATTA AATTCAACCA GTTTAAAACC TACAGAATAA AGGTCGTACA CGTTAATAGC
TGTGGACAAA CTGATGATTT CCAACTTATC ACTTTCTCTC CTTCACCAGT CCCTAATGTT
GTCACCAATG CAAATCCTAT CTGTTATGAT GGGGTAATTA ATCTGCAGGG AAGCATTACT
GGTGGGGCAT ATGCTTCATT TGAATGGGTA GGTAACGGCG GCAGTTTTTC ACCTGCAACG
GGGAATTTGA CAACGACTTA TACGCCTAGC ATTGCCGAAA GAAATGCTGG TACAACAACA
ATAATATTAA GAGTAAATAC TGGTTTGCAA GGTGCATGTG CAAGGGTTGA ATTCCCACTA
GTGGTCAACA TCCGGCCGAA CAACACCGGT ACAAATGCAA CTCAACAGAT CTGTACAGGC
AATACTGTTT CCCACACCCC TGCTTCAACT GTCGTCGGCA GTACATATAG TTGGACAGTG
AGTAATCCAG ATGGAAATGC CACGGGTCAA CTTCCTGGAT CCGGAACTGC AATTACGGAT
GTCATTATCA ACAATAGTGC TACAGCGAAT GCAGTTGTAA TCTATACTAT TACTCCACTT
AGTAACGGCT GCTCCGGTGT GCCATATACT TTCACTGTTA CGATAACTCC AAGGCCTGTT
CTGACAGCAA TAGCTGCCAA GTCAACAATT TGCAGTAATG AATCTTCAGC TATCACATTA
AGCTCTAATT TACTAAATAC CAGATATACC TGGACAAGTT CCGTTACTGG TAATATTACA
GGAAATAACA GTGTAAATAC GCAAACAGCA AACAGTATAA TCGATGATAT ACTAATTAAT
AACAGTACCA CCCAAGGTTC AGTAACTTAT ACCATCACAC CATTCTCCGC TACGGGATGC
CCAGGTACAC CGGTTTCTGT TACCGTAAAT GTAGATCCCG CATTAACAGT TGCCAATGCA
GGGGCTGATA AAAGTATTTG TGCTACTACC AGCTATACGA TGGAAGGAAA TACGGCTAAT
GTTGGCACAG GAACATGGAC ACCCGTATCA GCCAATGCCT CAGGTGTTAC CTTTGCTAAT
CCCAATAGCC CTACTACAGT GGTTAACGGC CTAAGCCCTG GAAATAGCTA TACCTTCAGG
TGGACAATTG ATGCCACAAG TGCCTGCAGC CCGACATTTG ACGAAGTTAC CATTACCGTT
AACGAACCCA CCATACCAGG AACTACAGCT GGAACCCCAA CAATAGTTTG CGCCAATAAC
AATACCGGAA CCATTTCCCT GAGTGGAAAT ATTGGCAATG TGATCAGATG GGAAAGCAGT
CTGGATGGCA ATACCTGGAT CCCGATTGCA GGAAATAATA CTACTACGAC CTATACCTTT
AATAACCTTA CCGTTTCTAC ACAATTTAGG GCTGTTGTTC AAAATGGCGG TTGTACAGTA
GAAAATTCTA CCGGAACAAC CATCACAGTA TCCCCCGCAT CCACCATTGC AACTGCAGGT
GCAGACCAGG TGCTGTGTAA TGAGCCGACT GCTACATTGG ATGGAAATAC TCCTGCTGCA
GGTGAAACAG GGGTATGGAC ACATGCCTCT GGCAGTCCAA TTGCAGTCAT AACCGATCCT
GCTAATCCCA AAACCACTGT AACTGGATTA ACACCAGGTC AAACTTATCG TTTCGTATGG
ACTATAACAG GCAATGCGCC ATGCGGGCCA ACTTTTGACG ACGTTACCAT AAGAAACAAT
CCACCAATTG TCCAGAACAT TAGCAGTACC AGTGCTGTGG TTTGTAACGG CCAGGAAGTA
CTCCTTAATG GCAGTGCACC AACGGGCGGC GATGGAACTA ATTACACCTA TTCCTGGGAA
ATTAAAGTAG ATACAGGGCC CTGGAATCTT ATAAATAATG CAACCGACAA AGACCTGATC
ATTACCCTCA CTACGCCTGG AACGGTCAGC TTCAGGAGAA TCGTAACTAG CGGGGGTTGT
ACTTCTACCA GCAATGAATA TTCCATTGTT GTTCAACCCG CAATAACAGG CAATAACATC
TCCGCAGACC AAATTATCTG TAGTGGCACT ACACCTGCAT TACTTACTGG CCCTGCACCA
ACAGGTGGCG GCGGAACATT TACCTATCAG TGGCAATCCA GTCCGGATGG AACGGTATGG
ACAAACATTG GGGGTGCCAA TGACATAGAT TATCAGCCAA CAGCCCTTAC CACAACCACT
TTTTACAGGC GTAATGCCAG CACCCTTGCC TGCGGGTCCC TGCAAGTTCC TAGTAATACA
GTTAAAATAA CCGTTAACCC GAATGCAAAA GCCGAATTTA CCTGGACAAA CGACAAGGGT
TGTGTTCCTT TTACCCTCCC TGTCACAGTA GTGCATTATG TAGATAGGAA TGCGACTTAC
ACTTGGTACG CGAATACTAC AGTTATTGGA ACCGGCACAA CATTCCCTGT TTACACCATT
CAGAACAGTA ATGAATCAGT GACGATCAGA CTGGTGGTAA CCAGTAGCCT GGGTTGTTCT
CAGGATGAAT TCAGTCATGT ATTTAGTACC AACCAGGCTG TACCGGCATC ATTTACACAA
AACACCACCG AAGGCTGCGG ACCATTACCT GTAAATTTTG TAAACACTTC TGACCTTACT
GCAGGAGCAA CATTTTCATG GGATTTTGGC AATGGCACGA GCTCAACGCA AGCCAATCCG
GGCACTGTAA CCTACCAGGC TGAAGCAACC GGAAAAGACA CGACTTATGT GGTAACCTTA
ACCGCTACTA CTTCTTGCGG AAGTAATTCC GTTACTTCAA CCGTACTTGT AAAAGCAAAG
CCCGTAGCCA TATTTTCACC AAGCAGAACA GATGGTTGTT CACCTATGCT TGTCAACTTT
ACTAATACTT CTCCGGGTGG TGCAGGTACT ACTTATTTTT ATGATTTCGG CGATGGCAGC
CCTGTTATAC AGCGACCGGA TAAATCTCCT GTACAACATA CCTACAATAC CACGGTAACC
ACTACCTTCA GGGCCACGTT AACAGTTGTA AACGAATGTG GTACCGATAT CCGTGCGTAC
AATATCCGTG TTGCTCCGCA AAACATTACG CCTGAACTGG TAGTTGATGC CAATGAAAAA
GAAGGCTGCG CACCACATAC CGTCAATTTT GACAACAACT CTATTGGTGC ATCCCGGTTT
ACATTTGATT TTGGCGATGG CAGTCCAATC CAGACTGTGC TAACCACCGG CAGGGTTCCC
CATGTGTATA CTATGCCAGG CACATTCACC ATCACAATGA CCGCCTACAA CAGTTGCTCA
GAAATCTCTA CTACAGAAAC CGTTACTGTT CTGCCCCAGC CAATTGCTGA TTTCGATGCA
GTAAACAAAT TAGGTTGTAC CGGCCTTGCC GTTAAATTTA CAAACAACAC TCAAAACGGG
GTTAGCTATC TATGGGATTT TGGAGACGGT TCTCCAACTT CTACAGAAGT TGAACCAACC
CATGTCTATA CCGGCAGCCA GGAATACTAT ACCGTGACGC TTACAGCTGT AAACAACCTG
GGCTGCCCAA TGACGGTTAC CAAAACCAAC TTCATCCACA TCGTACAACC TCCTGTTGCC
GCCTTTAATG TCAACCCTTC TACCCTGATC AGCATTCCGG ATTATACCTT TAATTTCGAA
GATCAGAGTA CCAATACCCC TACCATCTGG GAATGGGATT TTGGCGATGG CACCAGTTCG
GCACTAAGAA ACCCGAGCCA TACCTACCTG GATACAGGCA CCTATAAAGT GACACTCAAG
GTAACCAACC AGCAGGGCTG CTTTACCACT ACTTTTAAAA ATGTAACCAT TAAAGGTGTT
CCGGGCTATT TATTTGTACC TAATTCTTTT ATACCGGGCG ATACACGTCC GGAGCTGCGG
GAGTTCCGCG CCAAAGGATC GGGAATCGCT AACTGGCGCT TCAGCATCTT TAACAAATGG
GGGCAACTGT TATGGGAAAC AACCAAGCTG GAAGAAGGCC GGCCTGCCGA AGGCTGGGAT
GGCACATTTA AAGGGCAACC TATGCCTCAG GGAGTTTACT TCTGGAAAAT AGATGTGCAA
ATGATCAATG GAACAGAATG GAAAGGCATG ACCTACGACA AATCTGTACC TAAACGAACA
GGACCAATAC ATTTAATCAG ATAG
 
Protein sequence
MVKRLLFFTF ALLFLQISEA FSQITIGTVD AGPYTPGSSI AATFSINPTT CINRDNQFDL 
VLVSPAGVEL STIGSYTGFY TTFINGTIPQ GTLPGTGYKL RIKTTSPVLT PIAESNTFEI
KTGTAITAAV SSAPVITAPY IFGYCPGRPN AVFNFTNQST ATSTVTGTIK NELSGSIDAN
LTFTTAIQSF TASFAHYTVS IKAQMPDGTI GTRAYMVINN NVFNNFSTSG SNAFVCLPGG
FLQYGVDVNG PTGIQNNYPG NTYQIMWGDG VTDTYTFCDL KSGSVQHEYL RSSCGNPPYS
TGGGTVYNVF GINISVVSPC GQVGGAISTY VRVVDKPVNK FSHPAAACTG RPVTFVNNSI
LGQDPGSNSQ VCSNNNVTYN WYVDGQIVLA GVPRSTNLVH TFPTHGVHDV KLESVTSGSC
EGAAITQQIC IQDPPQPAFD FNGAPQTGCA PFTIQARDLS VIDNICNANN AYNWIVNGPA
GVQITNQGDK NPIFKFNNPG TYTIILEIQT ASCGTVRTQI PQQIVLADGA PVATLSDNVT
LCALNTFTFD NNTGPTRTIL TGTQQDLATT YTWSVTESDG SALAPGDFSF EGGTDLHTKF
PIIKFNQFKT YRIKVVHVNS CGQTDDFQLI TFSPSPVPNV VTNANPICYD GVINLQGSIT
GGAYASFEWV GNGGSFSPAT GNLTTTYTPS IAERNAGTTT IILRVNTGLQ GACARVEFPL
VVNIRPNNTG TNATQQICTG NTVSHTPAST VVGSTYSWTV SNPDGNATGQ LPGSGTAITD
VIINNSATAN AVVIYTITPL SNGCSGVPYT FTVTITPRPV LTAIAAKSTI CSNESSAITL
SSNLLNTRYT WTSSVTGNIT GNNSVNTQTA NSIIDDILIN NSTTQGSVTY TITPFSATGC
PGTPVSVTVN VDPALTVANA GADKSICATT SYTMEGNTAN VGTGTWTPVS ANASGVTFAN
PNSPTTVVNG LSPGNSYTFR WTIDATSACS PTFDEVTITV NEPTIPGTTA GTPTIVCANN
NTGTISLSGN IGNVIRWESS LDGNTWIPIA GNNTTTTYTF NNLTVSTQFR AVVQNGGCTV
ENSTGTTITV SPASTIATAG ADQVLCNEPT ATLDGNTPAA GETGVWTHAS GSPIAVITDP
ANPKTTVTGL TPGQTYRFVW TITGNAPCGP TFDDVTIRNN PPIVQNISST SAVVCNGQEV
LLNGSAPTGG DGTNYTYSWE IKVDTGPWNL INNATDKDLI ITLTTPGTVS FRRIVTSGGC
TSTSNEYSIV VQPAITGNNI SADQIICSGT TPALLTGPAP TGGGGTFTYQ WQSSPDGTVW
TNIGGANDID YQPTALTTTT FYRRNASTLA CGSLQVPSNT VKITVNPNAK AEFTWTNDKG
CVPFTLPVTV VHYVDRNATY TWYANTTVIG TGTTFPVYTI QNSNESVTIR LVVTSSLGCS
QDEFSHVFST NQAVPASFTQ NTTEGCGPLP VNFVNTSDLT AGATFSWDFG NGTSSTQANP
GTVTYQAEAT GKDTTYVVTL TATTSCGSNS VTSTVLVKAK PVAIFSPSRT DGCSPMLVNF
TNTSPGGAGT TYFYDFGDGS PVIQRPDKSP VQHTYNTTVT TTFRATLTVV NECGTDIRAY
NIRVAPQNIT PELVVDANEK EGCAPHTVNF DNNSIGASRF TFDFGDGSPI QTVLTTGRVP
HVYTMPGTFT ITMTAYNSCS EISTTETVTV LPQPIADFDA VNKLGCTGLA VKFTNNTQNG
VSYLWDFGDG SPTSTEVEPT HVYTGSQEYY TVTLTAVNNL GCPMTVTKTN FIHIVQPPVA
AFNVNPSTLI SIPDYTFNFE DQSTNTPTIW EWDFGDGTSS ALRNPSHTYL DTGTYKVTLK
VTNQQGCFTT TFKNVTIKGV PGYLFVPNSF IPGDTRPELR EFRAKGSGIA NWRFSIFNKW
GQLLWETTKL EEGRPAEGWD GTFKGQPMPQ GVYFWKIDVQ MINGTEWKGM TYDKSVPKRT
GPIHLIR