| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0199 |
|---|
| Symbol | |
|---|
| ID | 8251284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 229101 |
|---|
| End bp | 231533 |
|---|
| Gene Length | 2433 bp |
|---|
| Protein Length | 810 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644933849 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_003090487 |
|---|
| Protein GI | 255530115 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.286371 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA CTCTACACCT CTTAAATTTT TGCGCGCTCT TTTTGCTTTG TTCACTTACA
GCCGATGCCC AGCAGACAGC TACAATTAAA GGAAAGATAG TAACTGCTGA AGGAAAACCG
GCCGAAGGGA TTTCTGTTAA GCTGAAAGGC AGAAAGCTTG GAGATGCCAC CAATGGAAAA
GGTGAATATA AGATTAGTAA TGTGGCACCT GGTGATTACA CCATACAAGT GTCGGCAATC
GGGCTTTCCT ATCAGGAAAA AAGGATCAGT ATAGGAGCCG GGGAAGAACT GCAACAGAAT
TTTTCGCTGA ATGAAACCAA TGCCCGCCTT AATGAAGTAA ACATTTCTGA AGGGCGTAAA
AATAAATTTG CAGCCAGAAA AAGTGAAACG GTAGCTAAAA TGCCTTTAAG AAACCTGGAG
AACCCACAGG TGTATACCAG TATTTCAAAA GAACTGCTTG CCGATCAGCT GGTGACCAAT
TTTAACGATG CTTTGAAGAA TTCGCCCGGG CTGGATAAAT TATGGACCTC AACCGGTCGT
GGTGGTGATG GGGCTGCTTA TTATTCCTTA CGTGGTTTTA CCATACAGCC AACTATGGTT
AACGGGGTGG CCGGTTTAAC CAATGGTGAC CTGGACCCTG CTGGTATTGA AAAAATTGAA
GTGATCAAAG GTCCTTCGGG GGCACTGTTT GGGGGTACTT TAACCAGTTT TGGTGGTTTG
ATCAATATCA TTACCAAAAA GCCACTCGAT ACTTTAGGCG GATCAATAAG TTATACAGCT
GGTAATTTTG GCCTGAGCCG TCTTACGGCT GATGTATACG GCCCTGTAAA TAAAGACAAA
ACCCTGCTTG CCCGTTTTAA TACCGCTTAT CATACGCAAA ACAGTTTTCA GGATGCAGGT
TTCAGAAAGT CGTTTTACTT TGCTCCGGCA ATTGAATACC ATGCTACAGA TAAGCTGACC
TTAAACCTGG ATGCTGAGTT TTACAGCTAT GAAGGCACCA ACCCCTTAAT GGTGTTTTTG
AACAGGGGCA GGCAATTGAT TGCACGTACA CCGGAGGAGT TGAACTTCGA TTGGAACCGC
TCTTTTACGG CTAATGACAT TACGGTTAAA ACACCTGCCG TGAATATCCG TGGAAAGGCA
AGCTATAAAA TAAATGACCA ATGGGTTTCG GAAACGAATT TATCGCGCAG TTACCGCCAG
TCTGATGGCT ATTATCAATA TGTGATGTTT CTGGGTGCTA CAGATACTGA CCTGAGCAGG
CTGGCCGCTT ATCAGAACTC GACCAGTACG GCCATTGCCG CACAGCAGAA TTTTATCGGC
GACTTTAAAA TCGGTAACTT AAGGAACCGC CTGGTAATTG GTTTAGACTT TTTGAGCCAG
CACAACATCA ATAACAATTC TCCTTATGTG ACTTATGATG TGCTGCAGAC CAATGACCTT
ACCTCGCTCA ATGCCAATTA TTCCAAGTTC AACCGTTCGG GACTGATTAC CAAAATAGCA
GCCAGTACCG GAGCATCTTC AAAAAGCAGC AATGTGATGA ATGTGTATAG TGTATATGCA
TCCGATGTAT TGAATATAAC CGAACAGTTA CTGGCAATGG CCAGCTTAAG GGTAGACCGT
TTCCATAACC AGGGGACAGA CAATTACGTT GCCGCTACAA ATACTGGTGC TTACCTGCAA
ACAGCGTTTT CACCTAAATT TGGCCTGGTT TACCAGGTTG TGCCTGATCA GGTGTCTGTT
TTTGCGAATT ATATGAACGG GTTTAAAAAT TCCGGGAATG CCATAGTACT GAGGAATGGT
GTTTTCGAAG ATAGTGCCCT TAAACCGCAA CAAGCTAACC AGATTGAGGC TGGTGTAAAA
TTAGATGTAT TCAGCAACAG GTTAAGCCTT ACGGCCACCT ATTATGATAT TGCTGTAGAC
AATATGCCAC TTAGCTTAAC TGCTTCAGAT AATGGCACAT CACGTAATTA TACCGTACAG
GATGGTACCC AAAAAAGCAA AGGCTATGAA TTTGACCTTA CCGCCAATCC TGCAGAAGGC
TTTAATGTAG TGCTGGGCTA TAGCCATAAC GATAGTAAAA TGACCAAAGC CAGCCCAACT
ATTGAAGGGA GAAGACCGGT AAGTGCGGGG CCGGAAGACC TGGTTAACTT TTGGTTGAGT
TATACAGTGC CTTATGGCGT GCTGAATGGT TTTGGTGCAG GTTTTGGTGG TAACTACGCC
GGCAAAAATA TAATTACCAG TACCACAACC ACAGGCGATT TTACATTGCC TGCCTATACT
GTATTGAATG CTTCCTTATT TTATAACATG CAGAAATTCC GTATTGGCTT AAAAATGGAC
AACCTGACCG ATAAGCAATA TTTTAAAGGC TGGACAACGG TAGAGGTGCA GCAACCAAGA
AGCTTTCTTG CCAATATTTC CTTCAAATTT TAA
|
|---|
| Protein sequence | MKRTLHLLNF CALFLLCSLT ADAQQTATIK GKIVTAEGKP AEGISVKLKG RKLGDATNGK
GEYKISNVAP GDYTIQVSAI GLSYQEKRIS IGAGEELQQN FSLNETNARL NEVNISEGRK
NKFAARKSET VAKMPLRNLE NPQVYTSISK ELLADQLVTN FNDALKNSPG LDKLWTSTGR
GGDGAAYYSL RGFTIQPTMV NGVAGLTNGD LDPAGIEKIE VIKGPSGALF GGTLTSFGGL
INIITKKPLD TLGGSISYTA GNFGLSRLTA DVYGPVNKDK TLLARFNTAY HTQNSFQDAG
FRKSFYFAPA IEYHATDKLT LNLDAEFYSY EGTNPLMVFL NRGRQLIART PEELNFDWNR
SFTANDITVK TPAVNIRGKA SYKINDQWVS ETNLSRSYRQ SDGYYQYVMF LGATDTDLSR
LAAYQNSTST AIAAQQNFIG DFKIGNLRNR LVIGLDFLSQ HNINNNSPYV TYDVLQTNDL
TSLNANYSKF NRSGLITKIA ASTGASSKSS NVMNVYSVYA SDVLNITEQL LAMASLRVDR
FHNQGTDNYV AATNTGAYLQ TAFSPKFGLV YQVVPDQVSV FANYMNGFKN SGNAIVLRNG
VFEDSALKPQ QANQIEAGVK LDVFSNRLSL TATYYDIAVD NMPLSLTASD NGTSRNYTVQ
DGTQKSKGYE FDLTANPAEG FNVVLGYSHN DSKMTKASPT IEGRRPVSAG PEDLVNFWLS
YTVPYGVLNG FGAGFGGNYA GKNIITSTTT TGDFTLPAYT VLNASLFYNM QKFRIGLKMD
NLTDKQYFKG WTTVEVQQPR SFLANISFKF
|
|---|
| |