Gene Phep_0172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0172 
Symbol 
ID8251257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp200882 
End bp202537 
Gene Length1656 bp 
Protein Length551 aa 
Translation table11 
GC content45% 
IMG OID644933822 
Productpyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 
Protein accessionYP_003090460 
Protein GI255530088 
COG category[C] Energy production and conversion 
COG ID[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 
TIGRFAM ID[TIGR01349] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.371509 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAAA TAGTTAGAAT GCCCAAAATG AGTGATACCA TGACCGAAGG GGTGATGGCT 
AAGTGGCATA AAAAAGTTGG CGATAAAGTA AAAAGCGGTG ATGTAATGGC CGAAGTGGAA
ACCGATAAGG CTACTATGGA TTTAGAATCA TACTGGGATG GTACCATTTT ATACATTGGT
GTAGAAGAGG GAAAAGCTGT TCCGGTTGAT GCCATTATTG CAGTAGTAGG TAAGGAAGGC
GAAGATTATA AAGCTGCACT GGCAGCAGAA GAAGGTGCTG CTCCAGTACC AGCCAAAGAG
GAGAAAGCTG CTGAGCCATC ATCAGAAAAA CCTGCTGAAG ATGGTTCTGG TACAACAGCT
GGGTTATCGG AAGCTGAGCT TACTGCAAAA GGGGTTACCG TTATCCGCAT GCCTTTATTA
AGTGATACCA TGACTGAAGG CGTGATTGCT GAATGGCATA AAAAAGTAGG TGATAAAGTA
AAAGACGATG ATATCCTTGC TGATGTAGAG ACCGATAAGG CCACTATGGA AGTGATGGGT
TATGCTACCG GAACTTTATT GCATATTGGT GTAGAAAAAG GACAGGCTGC CAAAGTAAAT
GGTATTATTG CCATTGTTGG CCCGGAAGGA ACTGACATTA GTGGAATCCT GAGCCAGGGC
GATGCGCCTG CCAAACCTGC CGCAGATGCA AAATCTGATG CGCCTGTTGC AGAAAAAGCT
GTTGCTGAAG TAAAAGAAGA GACTCCTGTA GCCTCTGGTA GTGGAGAACG TTTAAAAGCA
TCGCCGCTGG CTAAACGGAT TGCCAAAGAT AAAGGTATTG ATCTGGCCCA GGTTGCAGGT
AGTGCTGATG GTGGCAGGAT CATTAAAAAA GATATAGAAA ACTTTAAACC TGCGGCAGCC
CCGGCAAATA CAGCATCTTC ATCAGCTCCG GCTGCAGAGA AAGCCGCACC GGTTATTCCT
CAATATGTAG GTGAAGAAAA ATATACAGAG AAACCAGTCT CGCAAATGCG TAAGGTGATT
GCCAAACGTT TGGCAGAAAG CCTGTTTACT GCCCCTCATT TTTACCTGAA CATCAGTATT
GATATGGACA ATGCCATATC AGCCCGTACT GCAATCAATG CGGTGGCTCC CGTGAAGATT
TCTTTCAATG ACATTGTCAT TAAAGCAGTT GCCGTTGCAT TGAAACAACA TCCTGCCGTT
AACTCTTCAT GGGGCGGAGA TAAGATCCGT TTCAATGAGC ATACGAACAT TGGTGTGGCC
ATGGCTGTAG AAGATGGTTT ACTGGTTCCT GTAGTTCGTT TTGCTGATGG CAAATCGTTG
TCTCATATCT CTGCTGAGGT TAAGGCATAT GGGCAGAAAG CAAAAGCTAA AAAACTACAA
CCGTCAGACT GGGAAGGTTC TACCTTTACC GTTTCTAACC TGGGTATGTT TGGTATTGAT
GAATTTACAT CAATCATTAA CTCTCCGGAT GGTGCGATCC TATCTGTAGG TGCTATACAG
CAGGTACCTG TGGTTAAAAA CGGAGCGGTT GTTCCTGGTA ACATCATGAA GCTAAGTTTA
GGCTGCGATC ACCGTGTGGT TGATGGGGCT ACAGGTGCCG CGTTCCTGCA AACGCTTAAA
GGCTTGCTGG AAGAGCCAAT AAGATTATTG GTTTAA
 
Protein sequence
MAEIVRMPKM SDTMTEGVMA KWHKKVGDKV KSGDVMAEVE TDKATMDLES YWDGTILYIG 
VEEGKAVPVD AIIAVVGKEG EDYKAALAAE EGAAPVPAKE EKAAEPSSEK PAEDGSGTTA
GLSEAELTAK GVTVIRMPLL SDTMTEGVIA EWHKKVGDKV KDDDILADVE TDKATMEVMG
YATGTLLHIG VEKGQAAKVN GIIAIVGPEG TDISGILSQG DAPAKPAADA KSDAPVAEKA
VAEVKEETPV ASGSGERLKA SPLAKRIAKD KGIDLAQVAG SADGGRIIKK DIENFKPAAA
PANTASSSAP AAEKAAPVIP QYVGEEKYTE KPVSQMRKVI AKRLAESLFT APHFYLNISI
DMDNAISART AINAVAPVKI SFNDIVIKAV AVALKQHPAV NSSWGGDKIR FNEHTNIGVA
MAVEDGLLVP VVRFADGKSL SHISAEVKAY GQKAKAKKLQ PSDWEGSTFT VSNLGMFGID
EFTSIINSPD GAILSVGAIQ QVPVVKNGAV VPGNIMKLSL GCDHRVVDGA TGAAFLQTLK
GLLEEPIRLL V