Gene Phep_0170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0170 
Symbol 
ID8251255 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp198909 
End bp199463 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content39% 
IMG OID644933820 
ProductNLP/P60 protein 
Protein accessionYP_003090458 
Protein GI255530086 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAAAA AGTTTCTGTT TTCTTCCCTC ATTGGTTTGT GCAGTTTAAC GGCTGTTAAA 
GCACAAACAA AAACAAAAGA GACCAATAAA TTAGCAGATC CTGACAATTT AGCTTCCCAG
TATTTTTCAC AGGTTATGGG TGTTGCTGTA GACGCAACTT CTAATGTAAA ACTGTATAAA
TTCATTTACG AATGGATTGG CACACCTTAC AGATTTGGTG GAAATACACA GAAAGGAATA
GACTGTTCGG CATTTACCAA AGCGATCTAC GACAAAGTTT TCAACACTAC CATATTGCGC
AATTCAAGGG ATATCTTTAG CATGGTTGAT CCATTGCCGA AAGACGAACT GAAAGAGGGC
GACCTGGTAT TTTTTAAAAT AAAAAGCAGG AGCATTACCC ATATAGGGAT CTACCTTGGC
GACAATCGTT TTGCCCATGC CTCATCCAGC AGAGGGGTGG TCATCAGCAA TTTGAATGAA
CCTTATTACT CAAGATATTT TTATAAAGGC GGCAGGATAC TGGATGAAGT TAAAGAAGAC
CTGATCCAGG AATAA
 
Protein sequence
MIKKFLFSSL IGLCSLTAVK AQTKTKETNK LADPDNLASQ YFSQVMGVAV DATSNVKLYK 
FIYEWIGTPY RFGGNTQKGI DCSAFTKAIY DKVFNTTILR NSRDIFSMVD PLPKDELKEG
DLVFFKIKSR SITHIGIYLG DNRFAHASSS RGVVISNLNE PYYSRYFYKG GRILDEVKED
LIQE