| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0054 |
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| Symbol | |
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| ID | 8251138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 55508 |
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| End bp | 56095 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644933703 |
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| Product | RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003090342 |
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| Protein GI | 255529970 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.528133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.722113 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTCAAGT TTGAGGACGC TATAGCGGGG TGCTTAAGGA ACGACAATAA GAGTAAAGAG
ATGGTGTATA AATCATTCTA TGGATATTTA ATGGGCGTAA CTTTACGGTA TGTTGAGGAT
AGGAATGATG CGGAAGAGCT TGTAAATGAC AGTTTTATAA AGATATTTAA GAACATCTCC
CAGTTTAGCG CACCTAAGTA TAATGACCAG ATGCAAAAAG CCTTTAAAGG CTGGATTGCC
AAAATTTCTT CCCGTACGGC AATAGATTTT TTGAGGGGCA AAAGAACATT TCTATACGTT
GATGACATGA CTGAACTGCA GCAGCCCATT ACCGAGCTGA ATGCGGTTTC GCAGCTTAAT
GTGCAGGATA TGATGAAGAT GCTGAATAAA TTACCGGAAA CACACAAACT GGTTTTTAAT
ATGTACGAAA TTGAAGGCTT TTCGCATGAA GAGATTTCAA AAATGATGAA TATCCCGGAA
AGTTCCTGCA GGGTTTACCT GACAAGGGCA AAGAACAAGT TGAGAGAACT TTATAAAAAC
TCTTTGTTAA ATGCATACGA ACCGACAACA CAAATCCGCA AAACATGA
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| Protein sequence | MLKFEDAIAG CLRNDNKSKE MVYKSFYGYL MGVTLRYVED RNDAEELVND SFIKIFKNIS
QFSAPKYNDQ MQKAFKGWIA KISSRTAIDF LRGKRTFLYV DDMTELQQPI TELNAVSQLN
VQDMMKMLNK LPETHKLVFN MYEIEGFSHE EISKMMNIPE SSCRVYLTRA KNKLRELYKN
SLLNAYEPTT QIRKT
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