| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0045 |
|---|
| Symbol | |
|---|
| ID | 8251129 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 45744 |
|---|
| End bp | 47903 |
|---|
| Gene Length | 2160 bp |
|---|
| Protein Length | 719 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644933694 |
|---|
| Product | glycosyl transferase family 51 |
|---|
| Protein accession | YP_003090333 |
|---|
| Protein GI | 255529961 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.223797 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCTTC CAAAAATTAA CATCCCTAAA AAGTACATTA AGATTGGCGC GTGGGTACTA
GGGGGTTTTC TGCTCGTCCT GGTTATTGGA GGCATTATTG CCTATAACAA AAGAGAAGCG
TTATTGGAAA AAATGATGGC AAAAGCCATT GCAAAAGCAG ATAAGGATTA TGGACTCGAT
ATAAAAATCG GAGAATATGG CTTTAACGGC CTCAATACCG TTCAGATGAA AGGTATTTCT
GTGGTACCCA AAGACCGCGA TACCTTGACG ACTATTAACG ATATGACCAT TGGGGTAAAG
CTTTTTCCTC TGATTTTTGG AGATGTAAAG CTTTCGGAGA TCAATTTAAA CAGCGGGAAA
GTCAACATTG TGTTCAGGGA CTCCCTGAGC AACCTTGATT TCTTCCTGAA ACGCAAAAAG
AAAGACAGCA CAGAAAATAA ATCAAAAATT GGCCTTGGCG ATCTTGCACA TAACCTTTTA
AACCAGGTTT TGTACAAAAT TCCGGATAAC ATGGAGGTCA AAGACTTTTT GCTGAACGTA
AATGACAACG ACACAGCAAA ATTAACTTTC CTGACCACAA CAGCCACGAT AGATGATGGC
GACCTGAACT CGACCATTCT AGTAAATGGG AATGAAGCAA CCTGGCACAT CAAGGGAACG
GTAAAACCGG GCAAAAAACA ACTGGACGTT ATGCTTTTTG CCGACAATAA AAAAGTTGAG
CTGCCCTATC TGGAGCGAAA ACTGCAGGCC AGGTTCAGCT TTGATACGGT AAGGACAGAA
ATGAAAAATG CCGATTACAG CGGGGATAAT TTTAAGATCT CAGGCTCCTG GTCGGTAAAA
AACCTGCTCA TCAACCATCC TAAGATCGCT TCGAACGATA TCATCGTTCC GGATGCAAAA
ATTGATGCAG ATATGCTGAT CGGAAAAAAC TTTGTGGCCC TTGACAGCTC ATCCACTATA
TTTCTGAAAA ACGCCGCTAT TCATCCTTAC TTAAAATACA CCCTTTCACC CCACAAAATT
TATGAACTTC AGCTGCATGC TCCTGACCAG GATGCCCAGG AAGTATTGAG CGCCTTTCCT
AAAGGACTCT TTGAATCGCT TGAGGGGATG CAGGTAAGCG GAAAAGTACG GTACGACCTG
AATTTTTACC TGGATAGCGC TTTGCCCGAC AGCGTGCAAT TCAATTCCTC GTTAACACCA
ATGAACTTTA AGATCCTGAA ATGGGGCAAA ACAAACCTGC AAAAGATCAA CAGTGACTTT
ATTTATACCC CCTATGAACG GGGCAAACCC ATGCGCGACA TTATGATCGG GCCTTCCAAT
CCCAACTTTA CGCCCCTTTC TGATGTTTCA AGCAATTTTA AAAATGCGAT CTTAACTTCT
GAAGACCCTT CTTTTTTTAC ACATAAGGGC TTTGTTCAGG AATCCATCCG CAAGTCGTTT
GCCGTAAACT TTAAAGAAAA GAAGTTTGTA CGCGGCGGCA GCACCATTTC TATGCAGCTG
GTTAAAAATG TTTTCCTCAG CCGTCAGAAA ACGCTCGCAA GAAAGGCTGA AGAGATCCTT
ATTGTCTGGC TGATAGAAAA CAACCACCTG GTCAGCAAGA ATCGTATGCT TGAGGTTTAT
TTCAACATTA TCGAAATGGG GCAGAACATT TATGGCATAG GAGAAGCTAC ACGATACTAT
TTTGGCAAAA GACCGTCTGA CCTGAACATA GGAGAAGGCA TTTTTCTGGC CAATATTGTC
CCCCGCCCTA AAATTGCCCT CTTTAAGTTC CGGGGTGATG GCGGATTGAA AGACTACCTG
TATCCCTATT TCAAATACAT TGGTAACATT ATGGCCAGAA GGGGACTTAC CCCTGCCGAT
ACCAGCGGAT ATGGCTTCTA CAATGTACGC CTTCGTGAAG GTTTGCGGCA ATATCTGCTG
CCCGACTCTG CTAAAATTGA CACCAATGCT TTCGATAACG ACGACCCGCT GCCTGCTGTT
GAAACACAGG ACGCTTCAAA GAACTTATTT GACCGCTTAT TTGGGCGCAA TAAAAAAGAT
ACTACAACCA CCCAGCCGGC AAAGCTAGAT ACAGCGCAAA AAACAAAAAA AGAATTAAGG
CAGGAGCGCC GCGAACAACG CCGGAAAGAA AAGGAGAAGG AGAAAACAGG ACAGCTTTAA
|
|---|
| Protein sequence | MHLPKINIPK KYIKIGAWVL GGFLLVLVIG GIIAYNKREA LLEKMMAKAI AKADKDYGLD
IKIGEYGFNG LNTVQMKGIS VVPKDRDTLT TINDMTIGVK LFPLIFGDVK LSEINLNSGK
VNIVFRDSLS NLDFFLKRKK KDSTENKSKI GLGDLAHNLL NQVLYKIPDN MEVKDFLLNV
NDNDTAKLTF LTTTATIDDG DLNSTILVNG NEATWHIKGT VKPGKKQLDV MLFADNKKVE
LPYLERKLQA RFSFDTVRTE MKNADYSGDN FKISGSWSVK NLLINHPKIA SNDIIVPDAK
IDADMLIGKN FVALDSSSTI FLKNAAIHPY LKYTLSPHKI YELQLHAPDQ DAQEVLSAFP
KGLFESLEGM QVSGKVRYDL NFYLDSALPD SVQFNSSLTP MNFKILKWGK TNLQKINSDF
IYTPYERGKP MRDIMIGPSN PNFTPLSDVS SNFKNAILTS EDPSFFTHKG FVQESIRKSF
AVNFKEKKFV RGGSTISMQL VKNVFLSRQK TLARKAEEIL IVWLIENNHL VSKNRMLEVY
FNIIEMGQNI YGIGEATRYY FGKRPSDLNI GEGIFLANIV PRPKIALFKF RGDGGLKDYL
YPYFKYIGNI MARRGLTPAD TSGYGFYNVR LREGLRQYLL PDSAKIDTNA FDNDDPLPAV
ETQDASKNLF DRLFGRNKKD TTTTQPAKLD TAQKTKKELR QERREQRRKE KEKEKTGQL
|
|---|
| |