Gene Phep_0045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0045 
Symbol 
ID8251129 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp45744 
End bp47903 
Gene Length2160 bp 
Protein Length719 aa 
Translation table11 
GC content43% 
IMG OID644933694 
Productglycosyl transferase family 51 
Protein accessionYP_003090333 
Protein GI255529961 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.223797 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCTTC CAAAAATTAA CATCCCTAAA AAGTACATTA AGATTGGCGC GTGGGTACTA 
GGGGGTTTTC TGCTCGTCCT GGTTATTGGA GGCATTATTG CCTATAACAA AAGAGAAGCG
TTATTGGAAA AAATGATGGC AAAAGCCATT GCAAAAGCAG ATAAGGATTA TGGACTCGAT
ATAAAAATCG GAGAATATGG CTTTAACGGC CTCAATACCG TTCAGATGAA AGGTATTTCT
GTGGTACCCA AAGACCGCGA TACCTTGACG ACTATTAACG ATATGACCAT TGGGGTAAAG
CTTTTTCCTC TGATTTTTGG AGATGTAAAG CTTTCGGAGA TCAATTTAAA CAGCGGGAAA
GTCAACATTG TGTTCAGGGA CTCCCTGAGC AACCTTGATT TCTTCCTGAA ACGCAAAAAG
AAAGACAGCA CAGAAAATAA ATCAAAAATT GGCCTTGGCG ATCTTGCACA TAACCTTTTA
AACCAGGTTT TGTACAAAAT TCCGGATAAC ATGGAGGTCA AAGACTTTTT GCTGAACGTA
AATGACAACG ACACAGCAAA ATTAACTTTC CTGACCACAA CAGCCACGAT AGATGATGGC
GACCTGAACT CGACCATTCT AGTAAATGGG AATGAAGCAA CCTGGCACAT CAAGGGAACG
GTAAAACCGG GCAAAAAACA ACTGGACGTT ATGCTTTTTG CCGACAATAA AAAAGTTGAG
CTGCCCTATC TGGAGCGAAA ACTGCAGGCC AGGTTCAGCT TTGATACGGT AAGGACAGAA
ATGAAAAATG CCGATTACAG CGGGGATAAT TTTAAGATCT CAGGCTCCTG GTCGGTAAAA
AACCTGCTCA TCAACCATCC TAAGATCGCT TCGAACGATA TCATCGTTCC GGATGCAAAA
ATTGATGCAG ATATGCTGAT CGGAAAAAAC TTTGTGGCCC TTGACAGCTC ATCCACTATA
TTTCTGAAAA ACGCCGCTAT TCATCCTTAC TTAAAATACA CCCTTTCACC CCACAAAATT
TATGAACTTC AGCTGCATGC TCCTGACCAG GATGCCCAGG AAGTATTGAG CGCCTTTCCT
AAAGGACTCT TTGAATCGCT TGAGGGGATG CAGGTAAGCG GAAAAGTACG GTACGACCTG
AATTTTTACC TGGATAGCGC TTTGCCCGAC AGCGTGCAAT TCAATTCCTC GTTAACACCA
ATGAACTTTA AGATCCTGAA ATGGGGCAAA ACAAACCTGC AAAAGATCAA CAGTGACTTT
ATTTATACCC CCTATGAACG GGGCAAACCC ATGCGCGACA TTATGATCGG GCCTTCCAAT
CCCAACTTTA CGCCCCTTTC TGATGTTTCA AGCAATTTTA AAAATGCGAT CTTAACTTCT
GAAGACCCTT CTTTTTTTAC ACATAAGGGC TTTGTTCAGG AATCCATCCG CAAGTCGTTT
GCCGTAAACT TTAAAGAAAA GAAGTTTGTA CGCGGCGGCA GCACCATTTC TATGCAGCTG
GTTAAAAATG TTTTCCTCAG CCGTCAGAAA ACGCTCGCAA GAAAGGCTGA AGAGATCCTT
ATTGTCTGGC TGATAGAAAA CAACCACCTG GTCAGCAAGA ATCGTATGCT TGAGGTTTAT
TTCAACATTA TCGAAATGGG GCAGAACATT TATGGCATAG GAGAAGCTAC ACGATACTAT
TTTGGCAAAA GACCGTCTGA CCTGAACATA GGAGAAGGCA TTTTTCTGGC CAATATTGTC
CCCCGCCCTA AAATTGCCCT CTTTAAGTTC CGGGGTGATG GCGGATTGAA AGACTACCTG
TATCCCTATT TCAAATACAT TGGTAACATT ATGGCCAGAA GGGGACTTAC CCCTGCCGAT
ACCAGCGGAT ATGGCTTCTA CAATGTACGC CTTCGTGAAG GTTTGCGGCA ATATCTGCTG
CCCGACTCTG CTAAAATTGA CACCAATGCT TTCGATAACG ACGACCCGCT GCCTGCTGTT
GAAACACAGG ACGCTTCAAA GAACTTATTT GACCGCTTAT TTGGGCGCAA TAAAAAAGAT
ACTACAACCA CCCAGCCGGC AAAGCTAGAT ACAGCGCAAA AAACAAAAAA AGAATTAAGG
CAGGAGCGCC GCGAACAACG CCGGAAAGAA AAGGAGAAGG AGAAAACAGG ACAGCTTTAA
 
Protein sequence
MHLPKINIPK KYIKIGAWVL GGFLLVLVIG GIIAYNKREA LLEKMMAKAI AKADKDYGLD 
IKIGEYGFNG LNTVQMKGIS VVPKDRDTLT TINDMTIGVK LFPLIFGDVK LSEINLNSGK
VNIVFRDSLS NLDFFLKRKK KDSTENKSKI GLGDLAHNLL NQVLYKIPDN MEVKDFLLNV
NDNDTAKLTF LTTTATIDDG DLNSTILVNG NEATWHIKGT VKPGKKQLDV MLFADNKKVE
LPYLERKLQA RFSFDTVRTE MKNADYSGDN FKISGSWSVK NLLINHPKIA SNDIIVPDAK
IDADMLIGKN FVALDSSSTI FLKNAAIHPY LKYTLSPHKI YELQLHAPDQ DAQEVLSAFP
KGLFESLEGM QVSGKVRYDL NFYLDSALPD SVQFNSSLTP MNFKILKWGK TNLQKINSDF
IYTPYERGKP MRDIMIGPSN PNFTPLSDVS SNFKNAILTS EDPSFFTHKG FVQESIRKSF
AVNFKEKKFV RGGSTISMQL VKNVFLSRQK TLARKAEEIL IVWLIENNHL VSKNRMLEVY
FNIIEMGQNI YGIGEATRYY FGKRPSDLNI GEGIFLANIV PRPKIALFKF RGDGGLKDYL
YPYFKYIGNI MARRGLTPAD TSGYGFYNVR LREGLRQYLL PDSAKIDTNA FDNDDPLPAV
ETQDASKNLF DRLFGRNKKD TTTTQPAKLD TAQKTKKELR QERREQRRKE KEKEKTGQL