Gene Phep_0035 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0035 
Symbol 
ID8251119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand+ 
Start bp38755 
End bp39369 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content41% 
IMG OID644933684 
Productribosomal protein S16 
Protein accessionYP_003090323 
Protein GI255529951 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0228] Ribosomal protein S16 
TIGRFAM ID[TIGR00002] ribosomal protein S16 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.173963 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.182146 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACTA AAATCAGATT GCAAAGATTC GGTAAAAAAG GAAAACCTTT TTTCCACGTA 
GTGGTAGCGG ATTCCCGTTC ACCAAGAGAT GGTAAATTTA TTGAGCGTTT AGGTTCTTAT 
AACCCAAATA CCAATCCTGC TACCATTGAC CTTAATTTTG ATAAAACTTT AGACTGGGTA 
AACAAAGGTG CTGAACCTAC GGATACTTGT CGCGCTATCC TTTCTTACAA AGGTGTTTTG 
TATAAAAAAC ATTTAGAGGG CGGTGTTAAA AAAGGTGCTT TAACCGCAGA ACAGGCAGAA 
GCTAAATTTG CTGAATGGTT AGGCGCAAAA GGTGAAAAAA TTGAAGGCAA AAAAGACAGC 
TTAACTAAAT CTAAAGATGA AGTTAAAAAA GCTGCTTTAG CTGCTGAGGC TAAGAAAAAT 
GCTGACCGTG CTGCTGCACT TGCAATTAAA AATGCACCTG TAGAAGAAGA AGTAGTAGAA 
GAGGCTCCTG TAGCTGAAGC TGCAACTGAA GAAGTAGCTG TAGAAGAAAG TCCTGCTGTA 
GAAGAAGCCC CTGTGGCCGA AGCTGCTGCT GAGGAAGCTC CTGCTGCTGA AGAAAGCAAA 
GAAGAAGAAG CATAA
 
Protein sequence
MATKIRLQRF GKKGKPFFHV VVADSRSPRD GKFIERLGSY NPNTNPATID LNFDKTLDWV 
NKGAEPTDTC RAILSYKGVL YKKHLEGGVK KGALTAEQAE AKFAEWLGAK GEKIEGKKDS 
LTKSKDEVKK AALAAEAKKN ADRAAALAIK NAPVEEEVVE EAPVAEAATE EVAVEESPAV 
EEAPVAEAAA EEAPAAEESK EEEA