Gene Phep_0027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0027 
Symbol 
ID8251111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp30536 
End bp32029 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content43% 
IMG OID644933676 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_003090315 
Protein GI255529943 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.447048 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACAAGA TCAGTTTAGC GAATAAATTT TTTTTAGCCC TCAGCCTGTT GTTTTTACCC 
GGACCTTTAT TTGCCAAATT TGATTTTAAT GCAAACTGTC TAAAGGCTTA TCAGCTGATT
TTTGAGCTTA AACTGAACCC GGCAAGACAA ATGGTCGCTT CAGAGAAGAA AGCTAATCCT
AACAATGCTA TTGTGCCTTT ACTGGAAAAT TACATCGATT TCTTTTATTT GCTGACAACA
GACAGTAAGG ATGATTTTAA CCGTTTGAAA GGCAATAAAG GGAGCCGGCT GGACCAGATT
GCAGATGATG ACAGCAATTC TCCGTATTAT TTATATGCAC AGGCAGAGAT CAATTTACAA
TGGGCGCTCA TTCGTGGGCG TTTTGGCGAA CAGTTTAATG CTGCGCTGGA AATTAAAAAA
GCCAACAGCT ACCTGCAGGA GAACGCGAAG AAGTTTCCCG GCTTCCATTT AAATTTAAAA
GGGATAGGCC TGATCAATGC CGTCCTGGGC AGCCTGCCGG ATGGTTTCAT GAAGAAAACA
CTATCCACCT TTGGAATCAA GGGAAATGTA AAAACCGGCC TGGCCATGAT GCAGAAGCTG
GCAGAGGGCT TACCTAAATC TACCTACGAG CCATTTTATG AAGAGGCTGT ATTTTATTAT
TCATTTGTAC TGGTAGATGT AGCCCATGCG GAAAATGCCT ATGCCGAAAC CATGAAATAT
GCGGCCAGGG TTTCGGACAA CAGTTTGTTA AAATCCTACC TTAAAGCTTA TGTAAGTGCC
AAAAGAGGGC ATAATGAGGA AGCGATTGGC GTTCTTGCCG AAAGGCCTTC CGGGGGACAG
TACCAGGCTT TTCCATACCT GGATTACCTG ATGGGGATTG CAAGGCTGAA TAAGCTTGAT
TTTAGTGCTG CAGCTTATTT CAATAAATTT TTGCAGAGCA ATAAAGGGGT AAGCTATGTA
AAGGACAGCT ACCTGCATTT GGGATGGATC GAATTGATCT CGGGCGATAT AAAGGGGTAT
CAGGCTTATG CTGAAAAAGT TAAAGGTATG GGCTATGCGA TTAACGAACG CGACAAGCAG
GCGCTGAACG AAGTGGCTTC AGGAAGTCCG AATGTTGGTC TTTTAAAAGC CAGGTTGTTA
TTTGACGGAG GCTATTACAG CAAATCGTTG GAAATATTGG GAGGAATAAA GGAGGGCGAC
CTGAGCCTGG TAAAAGACCG GACGGAATAC CATTACCGGC TGGGAAGGAA CAATGATGAA
CTGGGAAAAT GGGATGCTGC ACTGGAGCAT TACCAGCAGG CAGTAAATTA TGGAAAAAGC
CTGAAGGCGT ATTTTGCGGC CAATTCAGCT TTGTGCATGG GAAAGATCTA TATGAAGAAA
AAGGCCTATA CGCAGGCCAA GGCCAGCTTT AATACCGCGA TAAACATGAA AGACCATCAA
TATGAAAACA GTATTGAAAG TGAAGCAAGG GACAGCTTAA GAAGGATCAA TTAA
 
Protein sequence
MHKISLANKF FLALSLLFLP GPLFAKFDFN ANCLKAYQLI FELKLNPARQ MVASEKKANP 
NNAIVPLLEN YIDFFYLLTT DSKDDFNRLK GNKGSRLDQI ADDDSNSPYY LYAQAEINLQ
WALIRGRFGE QFNAALEIKK ANSYLQENAK KFPGFHLNLK GIGLINAVLG SLPDGFMKKT
LSTFGIKGNV KTGLAMMQKL AEGLPKSTYE PFYEEAVFYY SFVLVDVAHA ENAYAETMKY
AARVSDNSLL KSYLKAYVSA KRGHNEEAIG VLAERPSGGQ YQAFPYLDYL MGIARLNKLD
FSAAAYFNKF LQSNKGVSYV KDSYLHLGWI ELISGDIKGY QAYAEKVKGM GYAINERDKQ
ALNEVASGSP NVGLLKARLL FDGGYYSKSL EILGGIKEGD LSLVKDRTEY HYRLGRNNDE
LGKWDAALEH YQQAVNYGKS LKAYFAANSA LCMGKIYMKK KAYTQAKASF NTAINMKDHQ
YENSIESEAR DSLRRIN