| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0022 |
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| Symbol | |
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| ID | 8251106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 24424 |
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| End bp | 27765 |
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| Gene Length | 3342 bp |
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| Protein Length | 1113 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644933671 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003090310 |
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| Protein GI | 255529938 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATATTC GCGACCTGAT CAGCAGATAC AAGACAGATG AGCGTATTGT AGCATTGGCA
AAGGCACTAA ACGCCGGTAA AGGCACTAAA CTTCAACTAA AGGGTCTAGT AGGTTCTGCC
GATGCAACAA TTGCTGTGGC CATCTATTTC CTGTTACATA AACCCCAGCT ATTTGTACTT
CCCGATAGGG AAGAGGCGGC CTATTTTCTG GCCGACCTGG AAAGTATCCT CGATAAAGAG
GTACTGCTCT TTCCTTCTTC CTTCCGTAAA GCCTTTGATT TTACACAAGT GGATACCGCC
AATGTGCTGG CGCGTGCCGA AGTACTGAAC GAACTGAACC ACCAGTCAGA ATACGGCAAA
ATTGTGGTTT CCTATCCTGA GGCCCTGGCC GAAAAGGTGA TAGACCGCAC CGTGCTGGAA
AAAAACACGC TGGAGATCAG TTTAAATGCC AAACTGGGCA TCGATTTTAT CAATGAGTTT
CTAATCGACT ACGATTTTAA CCGTACAGAT TTTGTATATG AACCCGGACA GTTTTCCATC
CGTGGCGGTA TCGTCGATAT CTTTTCCTTC TCGCACGACC TGCCTTACCG CATCGAGTTT
TTTGGCGATA TCGTGGAAAG TATCCGTACT TTTGAAATTG AAAGCCAGCT TTCCGTTGAA
GATGTAAAAA CACTGACCAT CATTCCCAAT GTACAATCAA AATACCTTAC CGAAACCAAC
ATCAGTATCC TCGACTACAT TGAAAAGGAT ACCCAGGTTT GGTTTAAGGA CGTAGAATTC
ACTTTGGACA TTGTTAAAAG TGGATATAAA AAAGCGGTTG AACTATGGAA AGCCCTGCCC
GCAAAAGAAA AACAGGAAAA CCAGGACTGG ATAGATCCTA AATTTGCTTT TACAGACGAG
AAAATGATGG GCGATATGTT CCACGATTTT CCGCTTGTAG AATTTGGAAA GCAGTTCTTT
TATAAAACAG ATCAGGTTTT TCAGTTCGAA ATCAAACCCC AACCCTCTTT TAACAAAGAT
TTCAGCCTGC TGATCCACAA CCTTAAAGAA AACGAAAAAC AGGGCCTGCA TAACTTTATT
TTCAGCGCTT CAGTTAAACA AACGGAACGT TTATATGCCA TCCTGGACGA TATCGACAAA
TCTGTCAAAT TTACACCGGT AAATATCCCG CTCAGGGAGG GTTTTGTAGA TGGGGGGCAG
AAAGTGGCCT TTTATACCGA TCACCAGATT TTCGACCGTT TTTATAAATA TAAGCTCAAA
AGAGGCTATC AGCGCAGTCA GGCTATCACC TTAAAAGAAC TGAGGGACCT GAAGCCCGGC
GATTTTGTAA CCCATATAGA CCATGGGATA GGTAAATATG CCGGTTTGGA AAAGGTAGAG
GTAAACGGTA AAACCCAGGA AATGATCAGG CTGGTCTATG CCGATAACGA CCTGCTGTAT
GTCAACATCA ACTCCCTTAA CCGCATTGCC AAATACAGTG GAAAAGATGG TACTGCTCCA
AAAATGAACA AACTGGGCAC AGAGGCCTGG GATAAGCTCA AAAAAACAAC TAAAAAAAAA
GTTAAGGACA TTGCCCGAGA CCTGATCAAG CTGTATGCCC TGCGAAAATC GCAGGTAGGA
ACAGCTTTCG CGCCCGATGG CTATCTTGAA ACCGAGCTGG AAGCCTCCTT TATTTATGAA
GATACGCCCG ATCAGGAAAA GGCAACCAGC GATGTAAAAA AGGACATGGA AGCGCCACAT
CCCATGGACC GGCTGGTTTG TGGTGATGTG GGCTTCGGTA AAACGGAAAT TGCCATCAGA
GCTGCTTTTA AGGCGGTTGC CAATGGCAAA CAGGCGGCCG TACTGGTGCC AACCACCATT
CTTGCCCTCC AGCACTTTAA AACTTTTACC GGTCGATTAA AGGACTTTCC CTGCACCGTA
GATTACATCA ACCGCTTTAA AACAAGCAAG CAGATCAAAG AAACGCTGGC TAAAGTGGCC
GAAGGCAAAG TAGATATCAT CATTGGCACG CACCGCCTGC TCAGTAAGGA TGTGAAGTTT
AAAGATCTGG GCATCATGAT CATCGATGAG GAGCAGAAAT TCGGGGTATC TTCCAAAGAG
AAATTAAGGG CTTTAAGGGT AAATGTAGAT ACCTTAACCC TTACCGCAAC CCCCATACCC
AGAACACTGC ACTTCTCTTT AATGGGGGCC CGCGACCTTT CCATCATGAG TACCCCGCCA
CCAAACCGGC AGGCTGTAAA TACAGAATTA CATGTTTTTA ACGATAAACT GATCCAGGAA
GCCGTTCAGT TTGAACTGGA CAGGGGCGGA CAGGTGTTTT TTATCCATAA CAGGGTGCAC
GACCTCCCTC AACTGGGGGG ATTGATCCAG ACGCTGGTCC CAAAAGCCCG TATTGGTATT
GCACACGGAC AACTGGATGG CGATCAGCTG GAAGATGTGA TGCTCGATTT TATCAATGGA
GAAAAGGATG TCCTGGTAGC CACCACCATT ATCGAGGCCG GTCTTGACAT CCCAAATGCC
AATACCATCA TCATCAACCA TGCGCATATG TTTGGCCTGA GCGACCTGCA CCAAATGCGA
GGCAGGGTAG GCCGGTCCAA TAAAAAAGCC TTCTGTTACC TGCTTAGCCC GCCTTTAAGT
ACGCTTACTT CGGAAGCCCG CAAACGCCTG AGTGCAATTG AAGAGTTTTC AGACCTTGGA
AGCGGTTTTA ACATTGCCAT GAGGGATCTG GACATCCGGG GTAGCGGAAA CCTCTTAGGC
GCCGAGCAAA GTGGCTTCAT TGCCGAAATA GGTTTCGAGA TGTACCACAA AATACTGGAT
GAAGCCATAC AGGAACTGAA AACAGATGAA TTTAAAGACC TGTTTAAGGA TGAGCCCTTA
CGCCCCTTTG TGAATTTTAC ACAAGTGGAT ACCGACCTGG AGCTGTATAT TCCGGATGAT
TATGTAACCA ACATTACCGA AAGGTATAAC CTCTATACCG AACTTTCAAA AATTGAGGAT
GAAAACCAGC TAAAGGCGTT TGAACTGAGT TTAAAAGACC GTTTTGGTCC TGTTCCTCAT
CCGGTAAAAA CCATGTTGAA TGTATTGCGG CTGCAATGGA TAGCCAAAAA ACTGGCTTTC
GAAAAAATAA GTTTCAAAAA AGGTGTATTG CGCGGTTATT TCATTACCGA CAAACAATCT
GCCTTTTTTG ATTCTATTAT GTTCAATAAA ATATTGCATT TTGCACAGAT CCACCCGCGT
TTATGCAATC TTAAAGAAGT TAAAGATTCA CTCCGCATTT CATTCGACAA CCTCAATACC
ATAGATGAAG CTGTAGAAAT GCTGGAAATG GTGGTCAATT AA
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| Protein sequence | MNIRDLISRY KTDERIVALA KALNAGKGTK LQLKGLVGSA DATIAVAIYF LLHKPQLFVL
PDREEAAYFL ADLESILDKE VLLFPSSFRK AFDFTQVDTA NVLARAEVLN ELNHQSEYGK
IVVSYPEALA EKVIDRTVLE KNTLEISLNA KLGIDFINEF LIDYDFNRTD FVYEPGQFSI
RGGIVDIFSF SHDLPYRIEF FGDIVESIRT FEIESQLSVE DVKTLTIIPN VQSKYLTETN
ISILDYIEKD TQVWFKDVEF TLDIVKSGYK KAVELWKALP AKEKQENQDW IDPKFAFTDE
KMMGDMFHDF PLVEFGKQFF YKTDQVFQFE IKPQPSFNKD FSLLIHNLKE NEKQGLHNFI
FSASVKQTER LYAILDDIDK SVKFTPVNIP LREGFVDGGQ KVAFYTDHQI FDRFYKYKLK
RGYQRSQAIT LKELRDLKPG DFVTHIDHGI GKYAGLEKVE VNGKTQEMIR LVYADNDLLY
VNINSLNRIA KYSGKDGTAP KMNKLGTEAW DKLKKTTKKK VKDIARDLIK LYALRKSQVG
TAFAPDGYLE TELEASFIYE DTPDQEKATS DVKKDMEAPH PMDRLVCGDV GFGKTEIAIR
AAFKAVANGK QAAVLVPTTI LALQHFKTFT GRLKDFPCTV DYINRFKTSK QIKETLAKVA
EGKVDIIIGT HRLLSKDVKF KDLGIMIIDE EQKFGVSSKE KLRALRVNVD TLTLTATPIP
RTLHFSLMGA RDLSIMSTPP PNRQAVNTEL HVFNDKLIQE AVQFELDRGG QVFFIHNRVH
DLPQLGGLIQ TLVPKARIGI AHGQLDGDQL EDVMLDFING EKDVLVATTI IEAGLDIPNA
NTIIINHAHM FGLSDLHQMR GRVGRSNKKA FCYLLSPPLS TLTSEARKRL SAIEEFSDLG
SGFNIAMRDL DIRGSGNLLG AEQSGFIAEI GFEMYHKILD EAIQELKTDE FKDLFKDEPL
RPFVNFTQVD TDLELYIPDD YVTNITERYN LYTELSKIED ENQLKAFELS LKDRFGPVPH
PVKTMLNVLR LQWIAKKLAF EKISFKKGVL RGYFITDKQS AFFDSIMFNK ILHFAQIHPR
LCNLKEVKDS LRISFDNLNT IDEAVEMLEM VVN
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