| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0018 |
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| Symbol | |
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| ID | 8251102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 21275 |
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| End bp | 22282 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644933667 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_003090306 |
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| Protein GI | 255529934 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.380372 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGTAA AGATAGGAAA TATTGATCTG GGAGAATTTC CCTTATTGCT TGCACCGATG
GAGGATGTAA GCGATCCGCC TTTCCGTTTT GTATGTAAAC AAAGTGGGGT GGATATGATG
TATACAGAGT TTATTTCATC GGAAGGACTG ATCAGGGACG CGGCTAAAAG CAGGGCAAAA
CTGGATATCT TTGAATATGA AAGACCAATA GGCATACAGA TTTTTGGCAG CGAAATAGAC
CACATGCGTG AGGCTACTGA AATTGCTACG CTGGCTGGGC CTGATTTAAT GGACATCAAC
TATGGCTGTC CGGTTAAAAA CGTAGCCTGC AGGGGCGCTG GTGCCAGTTT GCTCCAGGAT
ATCGATAAAA TGGTACGGAT GACTGAAGCC GTTGTAAAAG CCACACATTT ACCTGTAACG
GTTAAAACAA GGCTGGGTTG GGACGACAAC ACCAAAAATG TGGAAGAGGT GGCAGAACGT
TTGCAGGATA TAGGTATCCA GGCTTTAACC ATTCATGGCC GTACCAGGGC ACAATTGTAT
AAGGGAGAAG CCGACTGGAC ACTGATCCGT CAGATCAAAA GGAACCCCAG GATAAAAATC
CCGATTTTTG GAAACGGGGA TGTGGACAGC ATCAGGAAAG CGGCCGACTG GCGCCTGGAA
TATGAGGTAG ATGGCATCAT GATCGGCAGG GCCGCCATTG GGTATCCCTG GATATTCAGA
GAGATCAGAC ATTTCTTTAA TACAGGGAAA ACCCTGGCGG GTCCGAGCAT AGAAGAAAGG
GTTTCCGTAT GCCGTACACA TTTTGAAAAA TCCATTGCCT GGAAAGGACC AAGAGTTGGT
ATATTTGAAA TGAGGCGTCA TTATGCCAAT TATTTTAAAG GCATACCCGA TTTTAAAAGC
TACAGGATGC AATTGGTTAA AGAAGAAAAT ATAGATACTA TTCACAGTAT TTTAGATGAA
ATAGCTGAAA AATATCAACA TATTTACCCG GCCGGTGAAA TGGCTTGA
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| Protein sequence | MSVKIGNIDL GEFPLLLAPM EDVSDPPFRF VCKQSGVDMM YTEFISSEGL IRDAAKSRAK
LDIFEYERPI GIQIFGSEID HMREATEIAT LAGPDLMDIN YGCPVKNVAC RGAGASLLQD
IDKMVRMTEA VVKATHLPVT VKTRLGWDDN TKNVEEVAER LQDIGIQALT IHGRTRAQLY
KGEADWTLIR QIKRNPRIKI PIFGNGDVDS IRKAADWRLE YEVDGIMIGR AAIGYPWIFR
EIRHFFNTGK TLAGPSIEER VSVCRTHFEK SIAWKGPRVG IFEMRRHYAN YFKGIPDFKS
YRMQLVKEEN IDTIHSILDE IAEKYQHIYP AGEMA
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