Gene Dfer_5765 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5765 
Symbol 
ID8229381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6926635 
End bp6927777 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content53% 
IMG OID644933610 
Productphosphoribosylaminoimidazole carboxylase, ATPase subunit 
Protein accessionYP_003090118 
Protein GI255039497 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0026] Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 
TIGRFAM ID[TIGR01161] phosphoribosylaminoimidazole carboxylase, PurK protein 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.484985 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.789674 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTTCAT CCCGAATAGG AATTCTCGGC GGCGGGCAAC TAGGGCTCAT GCTCCTGCAA 
GCAGCCGTTG ACTGGAACCT CGATATTCAC GTACTCGACC CCGACGCCGA AGCGCCGTGC
CGCAAAATAG CGCCCCACTT CACGCAAGGC TCCCTGCAAG ATTTTGATAC TGTCTACAAT
TTCGGCAAAG ACCTGGACGT CATTACCATC GAAATTGAAA AGGTAAATGT AGAAGCGCTC
GAAGCGCTTG AAAAGGAAGG CAAGAAGGTC TACCCGCAGC CGTCGGTCAT CCGTCAGATC
CAGGATAAGC GTATTCAAAA GCAGTTTTAC ACCGAAAAGG CACTTCCTAC CGCCGAATTT
ATCCTCACCG AAAACCGCCA GGACGTTTCA AACTTCATTT CGTTTCTTCC TGCATTCCAT
AAGCTCGGCA AGGACGGCTA CGACGGCCGC GGCGTGCAAA GGCTCACTTC CGCAGCCGAT
CTCGACAAGG CCTTCGACAA GCCCGGCCTG CTCGAAAAAG CCGTTGCATT TGAAAAGGAG
CTCGCGGTGA TTGTAGCACG CAATGCCGAC GGCGCTATCG AAACATTCCC TACGGTTGAA
ATGGTGTTCC ATCCGGAGCA TAATCTGGTG GAATACCTGT TCGCACCGGC GGAAATCAGC
GCGGAAGTGA ATGCGAAAGC GCAGGAAATC GCCCGTAAGA CCGCCGAGGC ATTCCAGATC
GTCGGTTTGT TGGCTGTGGA GCTATTTCTT ACGCCGGAAG GTGAAGTACT TATCAATGAA
GTCGCGCCGA GGCCGCATAA CAGCGGGCAC CACACGATCC GCGCTAACGC CACGTCGCAG
TATGAGCAAC ATTGGCGCGC AATCCTAAAT CTTCCCCTTG GCAGCACGCA TGCTTACGGC
CCGTCGGCAA TGGTTAATTT GCTGGGCGAG GATGGCTACG AAGGTCCGGC CGTTTATGAA
GGCATGGAGA AATTGCTGGC CACACCCGAA GTGTTCCCGT TCCTTTACTG GAAAGCGATC
ACCAAGCCTT TCCGCAAAAT GGGGCACATT ACGATTATGG ACACGGACAT TGCTTCATTG
AAGGCAAAAG CGGACTTTAT CCAGAAAAAT ATCAGAGTAA TCAGTCATAA AACGAATTCG
TAA
 
Protein sequence
MLSSRIGILG GGQLGLMLLQ AAVDWNLDIH VLDPDAEAPC RKIAPHFTQG SLQDFDTVYN 
FGKDLDVITI EIEKVNVEAL EALEKEGKKV YPQPSVIRQI QDKRIQKQFY TEKALPTAEF
ILTENRQDVS NFISFLPAFH KLGKDGYDGR GVQRLTSAAD LDKAFDKPGL LEKAVAFEKE
LAVIVARNAD GAIETFPTVE MVFHPEHNLV EYLFAPAEIS AEVNAKAQEI ARKTAEAFQI
VGLLAVELFL TPEGEVLINE VAPRPHNSGH HTIRANATSQ YEQHWRAILN LPLGSTHAYG
PSAMVNLLGE DGYEGPAVYE GMEKLLATPE VFPFLYWKAI TKPFRKMGHI TIMDTDIASL
KAKADFIQKN IRVISHKTNS