Gene Dfer_5734 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5734 
Symbol 
ID8229350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6889335 
End bp6889916 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content46% 
IMG OID644933579 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003090087 
Protein GI255039466 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.991793 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.125671 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCACC TACGCTACAA GCAAGAAGAA GAACTCTGTT TTTGGGATCA GTTCAGAAAA 
GGCGATGAAA ATGCCTACGC ATGCCTCTAC CGCTCTTACG TTCACATTCT TTACCAGTAC
TGTTCGCAAT TCACGATCGA CAAGCCTCTG ATCAAAGATT GCATCCACGA TTTGTTTGTA
GAATTATGGA GAAACCGTAT GACACTCGGT GACACCACCT CGGTTCGCTT TTATCTGATG
GCCTCCATCA AACGCAAATT GGTCCGCCAT TTGAATGCAC AACAAAAGCA TACCAGCAAC
GAAGATATCC CGGTGGAATA CTGGCATATC AACACGCCTT CCCACGAGAA CCACCTGATT
TCGGAGGAAG AATTCGAATC CACCAACCAG CACCTGAATG TGGCCATCAA CGGCCTGCCG
CGCCGCCAGC GCGAGGCGAT CTTCCTCAAA TTTTACATGA ACCTCAACAA CCACGAGATC
GCAGATTTGA TGAAAATAAA TATACAATCG GTATATAACC TGGTTTTCGG TGCGCTGGGC
AACCTTAAAA AGCAAATGAC ACTCGACAGA CTGACTTTTT AA
 
Protein sequence
MAHLRYKQEE ELCFWDQFRK GDENAYACLY RSYVHILYQY CSQFTIDKPL IKDCIHDLFV 
ELWRNRMTLG DTTSVRFYLM ASIKRKLVRH LNAQQKHTSN EDIPVEYWHI NTPSHENHLI
SEEEFESTNQ HLNVAINGLP RRQREAIFLK FYMNLNNHEI ADLMKINIQS VYNLVFGALG
NLKKQMTLDR LTF