Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_5724 |
Symbol | |
ID | 8229340 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 6878630 |
End bp | 6880351 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644933569 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_003090077 |
Protein GI | 255039456 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.526246 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAATC TTAATATCGA CGCAAAAAAA GACATTACCT ACGACGCTAT CGTGATCGGC TCGGGAGTTT CCGGCGGCTG GGCGGCGAAA GAACTGACCG AGAAAGGCCT GAAAGTACTC ATGCTCGAAA AGGGCAAGAA CCTGGAACAC GTAACCGGCT ATGAAAACGC ATTAAAAGCT CCCTGGGAGA CCCAATACAA TGGCCGGCTG ACGGTTAAAC AGAAAGAAAC CCACCCATTC CTCTCGCGCG ACTATCCGTA TAATGAAATG ACCGAGAAGT ACTGGATGAA CGACATGGAC CAGCCGTACG AGGAGAAAAA ACGCTTCGAC TGGTTCCGTC CGAACATCGT CGGTGGAAAG TCCATTATGT GGGGACGGCA ATCGTACCGG TGGAGCGACC TCGATTTCGA GGCGAACCTG AAAGACGGAG TCGCCGTCGA CTGGCCGATC CGTTACAAAG ACGTAGCTCC GTGGTATTCA TATGTAGAAA AACACGTAGG TATTTCGGGC GAAAAGCTGG GCCTCTCCCA GTTGCCGGAC AGCGATTTCA TTGCACCGAT GGAAATGTAC CATGTGGAAA AAGAAGTGCG TAAGCGCCTC GAAAAAGAAT TCCCTGGCCG TGTGATGACC ATTGGCCGCG TCGCTAACCT TTCCCAACCG ACCAAAATCC AGCTCGAAGG CGGGCGCGGC CCGTGCCAGT ACCGCAACCG CTGCTCTTAC GGATGCCCTT ACGGCGCCTA TTTCAGCACC CAGTCGTCGA CATTGCCGCC AGCGATGAAA ACCGGCCGAC TGACGCTCCG CCCGGATTCG GTGGTACGCG AAATTATTTA TGACGGCAAA AAACAGGGAG GCCGCGCTAC CGGCGTGCGT GTGATTGACA CGGTAACTTT GCAGGAACGC GAGTTTTTTG CCAACATCAT ATTCGTATGC GCCAGCGCGC TCGCAACCAC TGCATTGCTC CTTAACTCCA CCTCGGACCG CTTCCCGAAC GGAATGGGCA ATGACTCCGG CGAACTAGGC CATAACCTCA TGGACCACCA CTTCCGCACC GGCGCGAGCG GAACCTGGGA GGGCGATCTC GATAAATATT ACTTCGGCCG CCGGGCCAAC GGCATTTACG TGCCGCGCTA CCGCAACGTG GGCAGCGACA AGCGCGACTA TCTGCGCGGA TTCGGCTATC AGGGAGGCGG CGGCCGCCAG GGATGGCAGC GCAACGTGGC CGAGCTGGCA TTCGGTGCCG ATTTCAAGGA AGAACTTACC ACGCCGGGCA ACTGGACCAT GGGCTTCGGC GGATTCGGCG AAACGCTGCC TTACCACGAA AACCGCATGT ATCTCAGCAA GGACAAAAAG GACAAATTCG GCATTCCGGC CGTGGTGTTC GACGCGGATT TGCGTGAGAA TGAGAAAAAA ATGCGGAAAG ACATGATGAA CGACGCCGCC GAAATGCTAG AAAAATCCGG CGTGAAGAAC GTCCGTACAT ACGATAATGG CTCTTACCTC GGAATGGCCA TCCACGAAAT GGGAACCGCC CGCATGGGCC GCGACCCTAA AACGTCGGTC CTGAACGGCA ACAACCAGCT ACACGCAGTG AAAAACGTGT TCGTGACGGA CGGTGCCTGT ATGACTTCCG CGTCGTGCGT GAACCCGTCG CTCACCTACA TGGCGCTCAC GGCGCGTGCG GTGGATTTTG CGGTGAAAGA ATCCAAGAAG AAAAATATCT GA
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Protein sequence | MANLNIDAKK DITYDAIVIG SGVSGGWAAK ELTEKGLKVL MLEKGKNLEH VTGYENALKA PWETQYNGRL TVKQKETHPF LSRDYPYNEM TEKYWMNDMD QPYEEKKRFD WFRPNIVGGK SIMWGRQSYR WSDLDFEANL KDGVAVDWPI RYKDVAPWYS YVEKHVGISG EKLGLSQLPD SDFIAPMEMY HVEKEVRKRL EKEFPGRVMT IGRVANLSQP TKIQLEGGRG PCQYRNRCSY GCPYGAYFST QSSTLPPAMK TGRLTLRPDS VVREIIYDGK KQGGRATGVR VIDTVTLQER EFFANIIFVC ASALATTALL LNSTSDRFPN GMGNDSGELG HNLMDHHFRT GASGTWEGDL DKYYFGRRAN GIYVPRYRNV GSDKRDYLRG FGYQGGGGRQ GWQRNVAELA FGADFKEELT TPGNWTMGFG GFGETLPYHE NRMYLSKDKK DKFGIPAVVF DADLRENEKK MRKDMMNDAA EMLEKSGVKN VRTYDNGSYL GMAIHEMGTA RMGRDPKTSV LNGNNQLHAV KNVFVTDGAC MTSASCVNPS LTYMALTARA VDFAVKESKK KNI
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