Gene Dfer_5724 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5724 
Symbol 
ID8229340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6878630 
End bp6880351 
Gene Length1722 bp 
Protein Length573 aa 
Translation table11 
GC content56% 
IMG OID644933569 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_003090077 
Protein GI255039456 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.526246 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGAATC TTAATATCGA CGCAAAAAAA GACATTACCT ACGACGCTAT CGTGATCGGC 
TCGGGAGTTT CCGGCGGCTG GGCGGCGAAA GAACTGACCG AGAAAGGCCT GAAAGTACTC
ATGCTCGAAA AGGGCAAGAA CCTGGAACAC GTAACCGGCT ATGAAAACGC ATTAAAAGCT
CCCTGGGAGA CCCAATACAA TGGCCGGCTG ACGGTTAAAC AGAAAGAAAC CCACCCATTC
CTCTCGCGCG ACTATCCGTA TAATGAAATG ACCGAGAAGT ACTGGATGAA CGACATGGAC
CAGCCGTACG AGGAGAAAAA ACGCTTCGAC TGGTTCCGTC CGAACATCGT CGGTGGAAAG
TCCATTATGT GGGGACGGCA ATCGTACCGG TGGAGCGACC TCGATTTCGA GGCGAACCTG
AAAGACGGAG TCGCCGTCGA CTGGCCGATC CGTTACAAAG ACGTAGCTCC GTGGTATTCA
TATGTAGAAA AACACGTAGG TATTTCGGGC GAAAAGCTGG GCCTCTCCCA GTTGCCGGAC
AGCGATTTCA TTGCACCGAT GGAAATGTAC CATGTGGAAA AAGAAGTGCG TAAGCGCCTC
GAAAAAGAAT TCCCTGGCCG TGTGATGACC ATTGGCCGCG TCGCTAACCT TTCCCAACCG
ACCAAAATCC AGCTCGAAGG CGGGCGCGGC CCGTGCCAGT ACCGCAACCG CTGCTCTTAC
GGATGCCCTT ACGGCGCCTA TTTCAGCACC CAGTCGTCGA CATTGCCGCC AGCGATGAAA
ACCGGCCGAC TGACGCTCCG CCCGGATTCG GTGGTACGCG AAATTATTTA TGACGGCAAA
AAACAGGGAG GCCGCGCTAC CGGCGTGCGT GTGATTGACA CGGTAACTTT GCAGGAACGC
GAGTTTTTTG CCAACATCAT ATTCGTATGC GCCAGCGCGC TCGCAACCAC TGCATTGCTC
CTTAACTCCA CCTCGGACCG CTTCCCGAAC GGAATGGGCA ATGACTCCGG CGAACTAGGC
CATAACCTCA TGGACCACCA CTTCCGCACC GGCGCGAGCG GAACCTGGGA GGGCGATCTC
GATAAATATT ACTTCGGCCG CCGGGCCAAC GGCATTTACG TGCCGCGCTA CCGCAACGTG
GGCAGCGACA AGCGCGACTA TCTGCGCGGA TTCGGCTATC AGGGAGGCGG CGGCCGCCAG
GGATGGCAGC GCAACGTGGC CGAGCTGGCA TTCGGTGCCG ATTTCAAGGA AGAACTTACC
ACGCCGGGCA ACTGGACCAT GGGCTTCGGC GGATTCGGCG AAACGCTGCC TTACCACGAA
AACCGCATGT ATCTCAGCAA GGACAAAAAG GACAAATTCG GCATTCCGGC CGTGGTGTTC
GACGCGGATT TGCGTGAGAA TGAGAAAAAA ATGCGGAAAG ACATGATGAA CGACGCCGCC
GAAATGCTAG AAAAATCCGG CGTGAAGAAC GTCCGTACAT ACGATAATGG CTCTTACCTC
GGAATGGCCA TCCACGAAAT GGGAACCGCC CGCATGGGCC GCGACCCTAA AACGTCGGTC
CTGAACGGCA ACAACCAGCT ACACGCAGTG AAAAACGTGT TCGTGACGGA CGGTGCCTGT
ATGACTTCCG CGTCGTGCGT GAACCCGTCG CTCACCTACA TGGCGCTCAC GGCGCGTGCG
GTGGATTTTG CGGTGAAAGA ATCCAAGAAG AAAAATATCT GA
 
Protein sequence
MANLNIDAKK DITYDAIVIG SGVSGGWAAK ELTEKGLKVL MLEKGKNLEH VTGYENALKA 
PWETQYNGRL TVKQKETHPF LSRDYPYNEM TEKYWMNDMD QPYEEKKRFD WFRPNIVGGK
SIMWGRQSYR WSDLDFEANL KDGVAVDWPI RYKDVAPWYS YVEKHVGISG EKLGLSQLPD
SDFIAPMEMY HVEKEVRKRL EKEFPGRVMT IGRVANLSQP TKIQLEGGRG PCQYRNRCSY
GCPYGAYFST QSSTLPPAMK TGRLTLRPDS VVREIIYDGK KQGGRATGVR VIDTVTLQER
EFFANIIFVC ASALATTALL LNSTSDRFPN GMGNDSGELG HNLMDHHFRT GASGTWEGDL
DKYYFGRRAN GIYVPRYRNV GSDKRDYLRG FGYQGGGGRQ GWQRNVAELA FGADFKEELT
TPGNWTMGFG GFGETLPYHE NRMYLSKDKK DKFGIPAVVF DADLRENEKK MRKDMMNDAA
EMLEKSGVKN VRTYDNGSYL GMAIHEMGTA RMGRDPKTSV LNGNNQLHAV KNVFVTDGAC
MTSASCVNPS LTYMALTARA VDFAVKESKK KNI