| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5601 |
|---|
| Symbol | |
|---|
| ID | 8229216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 6729981 |
|---|
| End bp | 6731498 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644933447 |
|---|
| Product | Glucan endo-1,6-beta-glucosidase |
|---|
| Protein accession | YP_003089956 |
|---|
| Protein GI | 255039335 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5520] O-Glycosyl hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.621128 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCGGG TTTTCCGGCA GCCGTTCACT GGCATGGCCT GGCTTTTTTT ATATATCATG
AAAAGAAATG TGATTGCAAC GTTCACCTGG CTGGGTTTTG CGTTGATGAG CTGCTCAGCG
GAAACACCGG AAGAAAGCAA TAATCCCGCT CCTGCGGACA CCACAGCGGC TAACAAAGTG
GCCGTGTGGG TAACGAACGG CACGCAGGGC AAGCTGCTGA AAAGCGAGCA GCCGCTCTCC
ATCGTGAAAG CGGGGACGGT TTCGCCCGCC GCCAACCTGA TTAATATTGA TTTTTCCACC
AAATTGCAAG AAATGGAAGG CTTCGGTGCA GCGCTCACGG GCTCATCGGC CTATCTCATC
CAGCAAAAGC TCAATGCCTC GCAGCGCGAA AACCTGCTGA AAGACCTTTT TGATCCTAAC
ACCGGCATCG GGATGAGCTA TTTGCGCGTT ACGATGGGCG CGTCGGATTT TTCCCTGGAA
GATTTTACGT ACAACGACCT GCCCGCAGGA CAAACGGACG CGGCTTTAAG CAAATTCTCC
ATCGCAAAAG ATCAGGCGGA CCTCATTCCC GTCCTCAAAT CCGTGCTGGC CTTGCAGCCT
TCGATCCGCA TTATGGCAAC GCCGTGGTCG GCGCCGGCGT GGATGAAAAC CAGCGGAAAA
CTGGCCGGCG GCAGCCTCAA ACCGGAATGG TATGGTGCTT ATGCCCAGTA TTTTAAAAAA
TACCTCGACG CTTACCAGAA AGAAGGCATA ACGATCGACG CCATTTCGGT GCAGAACGAA
CCGTTGCACG AGGCGGCATA TCCTTCCATG GGCATGGATT CGGCGGCGCA GGGGAATTTC
ATTAAGAACC ACCTGGGCCC GTTGTTCGAG GCCAATGCGA TCCGGACGAA GATCCTGCTT
TACGATCATA ACTGGGACAG GCCGGGGTAT CCCATCTCGA TCCTCAACGA CCCGCAGGCG
AGCCGGTACG TGGCCGGATC GGCATTTCAT GCTTATGGCG GCAATGTGTC GGCGATGAGT
GAAGTGCATG ACCGCTTTCC CGACAAGGGC CTGTATTTTA CCGAAATATC AGGCGGCCGC
TGGGCGACCA ATTTTTCCGA TAATCTGAAA TGGAACATGT CGAATATATT CATCGGCACG
GCCAACAACT GGTCGAAAAA CGCGCTTTTG TGGAACATTG CGCTGGATGA GAATGATGGC
CCCAAAAACA AGGGCTGCGA CAATTGCCGC GGCGTGGTAA CCATCGCTTC CAATGGCAGT
ATTACCAAAA ATGTGGAGTA CTACACGATC GCGCACATGT CGAAATTCGT GCGTCCGGGC
GCATTCCGCG TGCAAACGGA CCGGCTGAGC GCATCGAGCC AATTGGAACA CGTCGCATTC
CTGAACCCCG ACGGCTCAAA AGTGCTGGTT ATACTGAACC AGGGCGCCGA TAACCGGAAG
TTTACGGTGG CCGTTGGTAA AAATCAGTAC AGCTACACCA TTGATCCAAA TGCGGTGGCA
ACGCTGGTTT GGAAATAA
|
|---|
| Protein sequence | MVRVFRQPFT GMAWLFLYIM KRNVIATFTW LGFALMSCSA ETPEESNNPA PADTTAANKV
AVWVTNGTQG KLLKSEQPLS IVKAGTVSPA ANLINIDFST KLQEMEGFGA ALTGSSAYLI
QQKLNASQRE NLLKDLFDPN TGIGMSYLRV TMGASDFSLE DFTYNDLPAG QTDAALSKFS
IAKDQADLIP VLKSVLALQP SIRIMATPWS APAWMKTSGK LAGGSLKPEW YGAYAQYFKK
YLDAYQKEGI TIDAISVQNE PLHEAAYPSM GMDSAAQGNF IKNHLGPLFE ANAIRTKILL
YDHNWDRPGY PISILNDPQA SRYVAGSAFH AYGGNVSAMS EVHDRFPDKG LYFTEISGGR
WATNFSDNLK WNMSNIFIGT ANNWSKNALL WNIALDENDG PKNKGCDNCR GVVTIASNGS
ITKNVEYYTI AHMSKFVRPG AFRVQTDRLS ASSQLEHVAF LNPDGSKVLV ILNQGADNRK
FTVAVGKNQY SYTIDPNAVA TLVWK
|
|---|
| |