Gene Dfer_5599 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5599 
Symbol 
ID8229214 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6725529 
End bp6728477 
Gene Length2949 bp 
Protein Length982 aa 
Translation table11 
GC content55% 
IMG OID644933445 
ProductTonB-dependent receptor 
Protein accessionYP_003089954 
Protein GI255039333 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.89451 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCATTG CCGTGATTTT GGCGACGCTC GGCCTGGCGC ATGCGCAGGA GATCGTCGTG 
AAAGGGGTGA TCAGGGATCA GCAAAACGAG GCGCTTCCGG GCGCGAGTGT TCTGGTGAAG
GGGACGCAAT CAGGTACTGT AACAGATGTC GACGGAAATT ATTCGATCGG GGTGCCCAAC
GAACAGGCAG TGCTGGTCTT TTCATTTATC GGTTACGGAT CGCAGGAAGT TACTGTCGGC
AATCGTACGC AGATCGACGT AACGCTCGGT GCGGACCTGA AAACGCTGAA CGAAGTAGTG
GTGATCGGCT ACGGTACCCA GAAACGGGGC GACGTAACGA CGTCCATTGC ATCGGTGGAT
ACGAAGGATA TCGAAGAGCG GCCGATTTTG CAGGCCGCAC AGGCACTGCA GGGTAAGGCT
GCCGGTGTGC AGGTAACGCA GCCGTCGGGC AAGCCGGGTA GCGCATTGTC CATCCGCGTG
CGCGGGGCCA CGTCCGTTCA GGCGGGCAAT GAGCCGCTGT ACGTCGTGGA CGGCGTGCCG
ACGATGGATA CGCGGGACCT GAACGTGAAC GACATTGAAA GCATTCAGGT GCTCAAAGAT
GCGTCATCGG CGGCTATTTA CGGGGCGAGG GCTTCCAACG GGGTGGTGAT CGTGACCACC
AAGAGAGGTA AGGCCAACCA ATCGCAGGTT AACTTCTCGG CTTACTACGG CATTTCGAAC
ATGGCGAAGA AGATCAATGT GCTTAACCCG CAGCAGTATG CCGACCTGAT GAACGAAATG
GGCCAGAACG TGACGGTAGG CAGCGAAACG ACCGACTGGA ACAAGGAAGT TTTCACGACG
GGCAGCAACC AGAACTACCA GCTTAACTTT TCCGGTGGTA CGGATAAAAA CAGGTATTTC
GTGTCAGGGG CCATCACCCA GGATAAAGGG ATTATCCAGC CTGCCAGCTA CCGTCGGTAT
TCATTCCGTA TGAACCTTGA TAACCAGATC AAAAGCTGGT TCAAGCTGAC TACGAACGTG
AGCTATGCCA ATGCCAAAGT GCGCGATGTG AAGGATAACA ACAATGCCGG TCGCAATGCC
GTCGTGCTTG GTGCACTGGG CGCGCCGCCT ACGATGGGCA TCTACACGCA GGATTCGCTA
AGGGGAACGA TTTTCTCGAC CAACCCGCTC AAAGCCGGGT GGGATAACCC GCTTGCTGCG
ATGTTCGGCC CGACACAGTC GGCACGCGAC AACCGGATCT TTGGTAATGT GGCCGGAGAT
CTGACGCTGG CGAAAGGGCT GGTGCTGCGC TCCAACTTCG GGATCGATTT TATGAACCAC
GCGAACGACT ATTACCTCGA TCCGTTCGGC ACCACCGAAG GATGGGGCGC CAATGGCAGC
ACCCATGGCC TGGGCAATGC AACCCGCAGC AACTCATTCA CCTACCTTTG GGAAAATACG
GCCAACTACG AGAAGAAGTG GGACAAGCAC GAGTTCTCGG CCCTGGCGGG TACGACGGTC
CAGAAAAACA CCTGGAACAA TTCGTACATG GCAGGCCGCG ATTTCCCGGC GGACGGTGTC
GTGAAAACGA TGAATGCGGC GAACGAGATT ACCGAAGCCT ACACCGAGCA GTCGGAATGG
TTCCTGAATT CTTATCTGGG ACGGTTGATG TATAATTTCG ATAGTAAATA CCTGATTACG
GCCAATTTCC GGGCGGACGG GTCGTCGAAA TTGGCCAGAG GCAACCAATG GGGCTTCTTT
CCGTCGGTAT CGGCCGGATG GCGTATTTCC GCCGAGCCGT TCATGGAGGA TGTCAAGTTC
ATCAATGACC TGAAATTACG CGGAGGATGG GGCCAGAATG GTAACCAGGA GGGCCTGGCG
AACTACGCGT CGTTCGGGCT GAACAGTTAC ACGCGCCGCA CGCCTACCTC CCCGCCATCG
GGCCCGGCCG TCACGCCGCC TACCTACGCG CCCAATCCTG ATCTCCGTTG GGAAACGACT
ACGCAAACCA ATATCGGTGT GGACCTGAGC ATGTTGCAGG GACGACTGAC ACTTACCGCG
GACGCTTATC TCAAAAAGAC GAACGACCTG TTGCTGAACG TCCCGCTCCC CAATACGAGC
GGCTACACCT ACATGCCCAG GAATTCGGGT AAACTGGAAA ACAAGGGTCT GGAATTTGTG
CTGTCGAGCG TGAACTTCGA TAAGGCTGAT TTTCAATGGA CTACGGATTT TAACATTGCA
TTCAACCGCA ACAAAATCAC CGAATTACAG CTGAGCAAAA TTTACCGGTA TGCCGATGTG
GAAGGCCGGA GCGACCAGAT CATCATTTTG CAGGAAGGTG CTTCGCTCGG GACTTTCTAC
GGATACATTG CCGACGGCGT GAACCCGGAA ACCGGGGATA TGATCTACCG CGATGTGAAT
GGCGACGGTT CTTTTTCACC ATCCGACCGC ACGATCCTGG GTTCGGCCCA GCCGAAATTC
ACCTACGGAA TGAACAACAA CCTGACTTAC AAGAATTTCA GTTTGTCGTT CCTCTTCCAG
GGTTCGCATG GAAACAAGGC ATTCAATGCA TCGAGGCTTG AAACGGAAGG GATGTATGAC
AGCAAGAACC AGTCGACCGA AGTGCTGAGA CGCTGGCAGA AGCCGGGTGA CATTACCGAC
ATTCCGAGGG CAACCGACGG CAATGTCAAC AACTCGCTCA TTTCGTCACG CTTTGTTGAA
AATGCATCGT TCCTCCGGAT GAAAAGCGCC ACCATTTCCT ACGCACTCAG CAAGGAACTG
GCCGGCAAGA TTAAGCTGAG CCGGGCATCC GTTTACCTGA CGGCCCAAAA CCTGTTCACC
ATCACGAAAT ACAAAGGCTT TGATCCCGAG GTGAATGCAT TCACTTCAAG CGGCGCCACG
TTAGGAATCG ACTACGGCAC TTACCCCGTT TCCCGTGCAT TTGTAGCAGG TATCAATGTT
TCGTTTTAA
 
Protein sequence
MFIAVILATL GLAHAQEIVV KGVIRDQQNE ALPGASVLVK GTQSGTVTDV DGNYSIGVPN 
EQAVLVFSFI GYGSQEVTVG NRTQIDVTLG ADLKTLNEVV VIGYGTQKRG DVTTSIASVD
TKDIEERPIL QAAQALQGKA AGVQVTQPSG KPGSALSIRV RGATSVQAGN EPLYVVDGVP
TMDTRDLNVN DIESIQVLKD ASSAAIYGAR ASNGVVIVTT KRGKANQSQV NFSAYYGISN
MAKKINVLNP QQYADLMNEM GQNVTVGSET TDWNKEVFTT GSNQNYQLNF SGGTDKNRYF
VSGAITQDKG IIQPASYRRY SFRMNLDNQI KSWFKLTTNV SYANAKVRDV KDNNNAGRNA
VVLGALGAPP TMGIYTQDSL RGTIFSTNPL KAGWDNPLAA MFGPTQSARD NRIFGNVAGD
LTLAKGLVLR SNFGIDFMNH ANDYYLDPFG TTEGWGANGS THGLGNATRS NSFTYLWENT
ANYEKKWDKH EFSALAGTTV QKNTWNNSYM AGRDFPADGV VKTMNAANEI TEAYTEQSEW
FLNSYLGRLM YNFDSKYLIT ANFRADGSSK LARGNQWGFF PSVSAGWRIS AEPFMEDVKF
INDLKLRGGW GQNGNQEGLA NYASFGLNSY TRRTPTSPPS GPAVTPPTYA PNPDLRWETT
TQTNIGVDLS MLQGRLTLTA DAYLKKTNDL LLNVPLPNTS GYTYMPRNSG KLENKGLEFV
LSSVNFDKAD FQWTTDFNIA FNRNKITELQ LSKIYRYADV EGRSDQIIIL QEGASLGTFY
GYIADGVNPE TGDMIYRDVN GDGSFSPSDR TILGSAQPKF TYGMNNNLTY KNFSLSFLFQ
GSHGNKAFNA SRLETEGMYD SKNQSTEVLR RWQKPGDITD IPRATDGNVN NSLISSRFVE
NASFLRMKSA TISYALSKEL AGKIKLSRAS VYLTAQNLFT ITKYKGFDPE VNAFTSSGAT
LGIDYGTYPV SRAFVAGINV SF