Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_5599 |
Symbol | |
ID | 8229214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 6725529 |
End bp | 6728477 |
Gene Length | 2949 bp |
Protein Length | 982 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644933445 |
Product | TonB-dependent receptor |
Protein accession | YP_003089954 |
Protein GI | 255039333 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.89451 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCATTG CCGTGATTTT GGCGACGCTC GGCCTGGCGC ATGCGCAGGA GATCGTCGTG AAAGGGGTGA TCAGGGATCA GCAAAACGAG GCGCTTCCGG GCGCGAGTGT TCTGGTGAAG GGGACGCAAT CAGGTACTGT AACAGATGTC GACGGAAATT ATTCGATCGG GGTGCCCAAC GAACAGGCAG TGCTGGTCTT TTCATTTATC GGTTACGGAT CGCAGGAAGT TACTGTCGGC AATCGTACGC AGATCGACGT AACGCTCGGT GCGGACCTGA AAACGCTGAA CGAAGTAGTG GTGATCGGCT ACGGTACCCA GAAACGGGGC GACGTAACGA CGTCCATTGC ATCGGTGGAT ACGAAGGATA TCGAAGAGCG GCCGATTTTG CAGGCCGCAC AGGCACTGCA GGGTAAGGCT GCCGGTGTGC AGGTAACGCA GCCGTCGGGC AAGCCGGGTA GCGCATTGTC CATCCGCGTG CGCGGGGCCA CGTCCGTTCA GGCGGGCAAT GAGCCGCTGT ACGTCGTGGA CGGCGTGCCG ACGATGGATA CGCGGGACCT GAACGTGAAC GACATTGAAA GCATTCAGGT GCTCAAAGAT GCGTCATCGG CGGCTATTTA CGGGGCGAGG GCTTCCAACG GGGTGGTGAT CGTGACCACC AAGAGAGGTA AGGCCAACCA ATCGCAGGTT AACTTCTCGG CTTACTACGG CATTTCGAAC ATGGCGAAGA AGATCAATGT GCTTAACCCG CAGCAGTATG CCGACCTGAT GAACGAAATG GGCCAGAACG TGACGGTAGG CAGCGAAACG ACCGACTGGA ACAAGGAAGT TTTCACGACG GGCAGCAACC AGAACTACCA GCTTAACTTT TCCGGTGGTA CGGATAAAAA CAGGTATTTC GTGTCAGGGG CCATCACCCA GGATAAAGGG ATTATCCAGC CTGCCAGCTA CCGTCGGTAT TCATTCCGTA TGAACCTTGA TAACCAGATC AAAAGCTGGT TCAAGCTGAC TACGAACGTG AGCTATGCCA ATGCCAAAGT GCGCGATGTG AAGGATAACA ACAATGCCGG TCGCAATGCC GTCGTGCTTG GTGCACTGGG CGCGCCGCCT ACGATGGGCA TCTACACGCA GGATTCGCTA AGGGGAACGA TTTTCTCGAC CAACCCGCTC AAAGCCGGGT GGGATAACCC GCTTGCTGCG ATGTTCGGCC CGACACAGTC GGCACGCGAC AACCGGATCT TTGGTAATGT GGCCGGAGAT CTGACGCTGG CGAAAGGGCT GGTGCTGCGC TCCAACTTCG GGATCGATTT TATGAACCAC GCGAACGACT ATTACCTCGA TCCGTTCGGC ACCACCGAAG GATGGGGCGC CAATGGCAGC ACCCATGGCC TGGGCAATGC AACCCGCAGC AACTCATTCA CCTACCTTTG GGAAAATACG GCCAACTACG AGAAGAAGTG GGACAAGCAC GAGTTCTCGG CCCTGGCGGG TACGACGGTC CAGAAAAACA CCTGGAACAA TTCGTACATG GCAGGCCGCG ATTTCCCGGC GGACGGTGTC GTGAAAACGA TGAATGCGGC GAACGAGATT ACCGAAGCCT ACACCGAGCA GTCGGAATGG TTCCTGAATT CTTATCTGGG ACGGTTGATG TATAATTTCG ATAGTAAATA CCTGATTACG GCCAATTTCC GGGCGGACGG GTCGTCGAAA TTGGCCAGAG GCAACCAATG GGGCTTCTTT CCGTCGGTAT CGGCCGGATG GCGTATTTCC GCCGAGCCGT TCATGGAGGA TGTCAAGTTC ATCAATGACC TGAAATTACG CGGAGGATGG GGCCAGAATG GTAACCAGGA GGGCCTGGCG AACTACGCGT CGTTCGGGCT GAACAGTTAC ACGCGCCGCA CGCCTACCTC CCCGCCATCG GGCCCGGCCG TCACGCCGCC TACCTACGCG CCCAATCCTG ATCTCCGTTG GGAAACGACT ACGCAAACCA ATATCGGTGT GGACCTGAGC ATGTTGCAGG GACGACTGAC ACTTACCGCG GACGCTTATC TCAAAAAGAC GAACGACCTG TTGCTGAACG TCCCGCTCCC CAATACGAGC GGCTACACCT ACATGCCCAG GAATTCGGGT AAACTGGAAA ACAAGGGTCT GGAATTTGTG CTGTCGAGCG TGAACTTCGA TAAGGCTGAT TTTCAATGGA CTACGGATTT TAACATTGCA TTCAACCGCA ACAAAATCAC CGAATTACAG CTGAGCAAAA TTTACCGGTA TGCCGATGTG GAAGGCCGGA GCGACCAGAT CATCATTTTG CAGGAAGGTG CTTCGCTCGG GACTTTCTAC GGATACATTG CCGACGGCGT GAACCCGGAA ACCGGGGATA TGATCTACCG CGATGTGAAT GGCGACGGTT CTTTTTCACC ATCCGACCGC ACGATCCTGG GTTCGGCCCA GCCGAAATTC ACCTACGGAA TGAACAACAA CCTGACTTAC AAGAATTTCA GTTTGTCGTT CCTCTTCCAG GGTTCGCATG GAAACAAGGC ATTCAATGCA TCGAGGCTTG AAACGGAAGG GATGTATGAC AGCAAGAACC AGTCGACCGA AGTGCTGAGA CGCTGGCAGA AGCCGGGTGA CATTACCGAC ATTCCGAGGG CAACCGACGG CAATGTCAAC AACTCGCTCA TTTCGTCACG CTTTGTTGAA AATGCATCGT TCCTCCGGAT GAAAAGCGCC ACCATTTCCT ACGCACTCAG CAAGGAACTG GCCGGCAAGA TTAAGCTGAG CCGGGCATCC GTTTACCTGA CGGCCCAAAA CCTGTTCACC ATCACGAAAT ACAAAGGCTT TGATCCCGAG GTGAATGCAT TCACTTCAAG CGGCGCCACG TTAGGAATCG ACTACGGCAC TTACCCCGTT TCCCGTGCAT TTGTAGCAGG TATCAATGTT TCGTTTTAA
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Protein sequence | MFIAVILATL GLAHAQEIVV KGVIRDQQNE ALPGASVLVK GTQSGTVTDV DGNYSIGVPN EQAVLVFSFI GYGSQEVTVG NRTQIDVTLG ADLKTLNEVV VIGYGTQKRG DVTTSIASVD TKDIEERPIL QAAQALQGKA AGVQVTQPSG KPGSALSIRV RGATSVQAGN EPLYVVDGVP TMDTRDLNVN DIESIQVLKD ASSAAIYGAR ASNGVVIVTT KRGKANQSQV NFSAYYGISN MAKKINVLNP QQYADLMNEM GQNVTVGSET TDWNKEVFTT GSNQNYQLNF SGGTDKNRYF VSGAITQDKG IIQPASYRRY SFRMNLDNQI KSWFKLTTNV SYANAKVRDV KDNNNAGRNA VVLGALGAPP TMGIYTQDSL RGTIFSTNPL KAGWDNPLAA MFGPTQSARD NRIFGNVAGD LTLAKGLVLR SNFGIDFMNH ANDYYLDPFG TTEGWGANGS THGLGNATRS NSFTYLWENT ANYEKKWDKH EFSALAGTTV QKNTWNNSYM AGRDFPADGV VKTMNAANEI TEAYTEQSEW FLNSYLGRLM YNFDSKYLIT ANFRADGSSK LARGNQWGFF PSVSAGWRIS AEPFMEDVKF INDLKLRGGW GQNGNQEGLA NYASFGLNSY TRRTPTSPPS GPAVTPPTYA PNPDLRWETT TQTNIGVDLS MLQGRLTLTA DAYLKKTNDL LLNVPLPNTS GYTYMPRNSG KLENKGLEFV LSSVNFDKAD FQWTTDFNIA FNRNKITELQ LSKIYRYADV EGRSDQIIIL QEGASLGTFY GYIADGVNPE TGDMIYRDVN GDGSFSPSDR TILGSAQPKF TYGMNNNLTY KNFSLSFLFQ GSHGNKAFNA SRLETEGMYD SKNQSTEVLR RWQKPGDITD IPRATDGNVN NSLISSRFVE NASFLRMKSA TISYALSKEL AGKIKLSRAS VYLTAQNLFT ITKYKGFDPE VNAFTSSGAT LGIDYGTYPV SRAFVAGINV SF
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