| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5535 |
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| Symbol | |
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| ID | 8229150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 6661854 |
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| End bp | 6663236 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644933382 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003089891 |
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| Protein GI | 255039270 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.225061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.373229 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATA AATTTATCGG CGCGGTCGTA TTAACCATCC TGGCAGCTTC CTGCCAGGTG
ACCAAGCCTT ACCAACGGCC CGAATTGACC ACACAGGGAC TTTACCGGGG CGAATCTTCG
CAGGACACGA TCAGCGTTGC AAGCATTTCG TGGAAACAGT TTTTCCCTGA CACCGCATTG
ACCCAACTCA TTACACGAGG CCTCGAACAG AACCCCGACC TGAGGATTGC CATGCAGCAC
ATTGTAGCGG CCAAAGCATC CCTTCAATTG AGCAAATCGG CCTTTCTGCC AGACCTGAAC
GGTACATTGT CGGTGAAACA GTCCAAGCTT GCATTCCCGC AGGGCTTCGG CATCATCAGC
TCCACCACCC AGTACGACCT GGGCCTGGGC TCTTCGTGGG AAGCGGATAT CTGGGGAAAA
CTCCGGAGCG CCAAACGCGG TGCGCTCGCA GGCCTGCTGC GGACAGAAGA AGCACGAAAG
GCGATCCGGA CAGAACTGAT CGCCGACATT GCCGGAAACT ACTACACACT GCTCGTACTG
GATCAGCAGC TGGCAATCCT TGAAAAAACG AAGAAAAACC GCTTCGCTGA CGTAAAAGCG
GTAACCATGC TGAAAGAAGC GAATATCCTG AACGGCGCGG CCATTTCGCA GAGCGAAGCC
AATGCCTACG CCGCCGAAAT CGCGATACCG GCATTGAAAA ACCAGATCCG CGAAACGGAA
AATGCATTGA ACCTGCTGCT GGGCCAGCCT TCCGGCGCAG TAACACGGAC AACGCTCGAC
CAGCAAAAGG CCAACATACC ACTGAAAACC GGTGTGCCGT CCCAACTTTT ACAGAACCGG
CCGGATGTGA AGCAAGCGGA ATACGCGCTT TGGGAAGCGT TTGAAAATAC CAATGTGGCT
AAAACGTTCT TTTATCCCGC CCTGACGATC ACCGCTAACG GCGGATTTAC CAGCTTCAAC
TTCCAGGACT GGCTAACATC GCTGGGGCTC TTCGGAAACG TGGCCGCGGG CCTCACGCAG
CCGATCTTCA ACCGGGGCGC CAACAAGGCC CGCCTCGCCA CGGCAAAAGC ACGGCAGGAG
CAAGCGGCGA TCGAACTTCA GAAGTCCATG CTGATAGCAG GCCGGGAGGT GTCGGACGCC
CTGTATGCCT ACGAAACCGC AGGCGAGCAG CGCGAAATAC GGGTAAAACA ACTTGCCTCA
CTCGCAAAGG CCGTCGATGC CAATAGAAAG CTGCTCCGGT TCAGTTCCAC CACCAACTAT
ACCGATGTGC TGACGTCGGA ACAAAACCTG CTCGCCGCGG AGCTCGACGC CGTGAACGAT
CGGCATCGGC AATGGCTGGC CGTGATCAGG CTTTACCATG CATTGGGAGG CGGGACGCGG
TAG
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| Protein sequence | MKNKFIGAVV LTILAASCQV TKPYQRPELT TQGLYRGESS QDTISVASIS WKQFFPDTAL
TQLITRGLEQ NPDLRIAMQH IVAAKASLQL SKSAFLPDLN GTLSVKQSKL AFPQGFGIIS
STTQYDLGLG SSWEADIWGK LRSAKRGALA GLLRTEEARK AIRTELIADI AGNYYTLLVL
DQQLAILEKT KKNRFADVKA VTMLKEANIL NGAAISQSEA NAYAAEIAIP ALKNQIRETE
NALNLLLGQP SGAVTRTTLD QQKANIPLKT GVPSQLLQNR PDVKQAEYAL WEAFENTNVA
KTFFYPALTI TANGGFTSFN FQDWLTSLGL FGNVAAGLTQ PIFNRGANKA RLATAKARQE
QAAIELQKSM LIAGREVSDA LYAYETAGEQ REIRVKQLAS LAKAVDANRK LLRFSSTTNY
TDVLTSEQNL LAAELDAVND RHRQWLAVIR LYHALGGGTR
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