Gene Dfer_5478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5478 
SymbolgltD 
ID8229090 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6605872 
End bp6607380 
Gene Length1509 bp 
Protein Length502 aa 
Translation table11 
GC content54% 
IMG OID644933322 
Productglutamate synthase subunit beta 
Protein accessionYP_003089834 
Protein GI255039213 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases 
TIGRFAM ID[TIGR01317] glutamate synthases, NADH/NADPH, small subunit 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAAAAC CAACCGGATT TTTAGAGTTT GAAAGGGAGT TGCCGAAAAA AAGAAGCGTA 
GAAGAGCGCT TGAAGGACTA CCGTGAGATT GAAACGGCAC CGACCGACTC TAATTCCAAA
CAGCAGGCAG CCCGTTGTAT GGACTGCGGA ATTCCTTTTT GCCATAATGG TTGTCCGCTG
GGCAACATCA TTCCCGAGTT CAACGACGCG GTGTATGATG AAAACTGGGG ACTGGCTTAC
GAAATATTAG CGTCTACCAA CAACTTCCCT GAATTCACAG GCCGCATTTG CCCCGCTCCT
TGCGAAGCAT CCTGCGTGTT GGGCATCAAC AAGCCGCCGG TAGCGATCGA GTACATCGAG
AAATCGATCA TCGAAAAAGC ATTCGAATTA GGTTTGGTTA AACCACGCAT TCCGAAAACC
CGCACCGGCA AGAAAGTGGC TGTGGTAGGT TCTGGACCTG CGGGAATGGC AGCCGCTTAC
CAGCTCAACC AGGCCGGTCA CTCGGTAGTA TTGCTCGAAA GAGCGGATAA AATCGGTGGT
CTGGTTCGCT ACGGTATCCC CGATTTCAAG CTCGACAAAG GCATTATCGA CCGTCGTATG
GCGGTGATGG AAGCGGAAGG CGTTGAATTC CGCACCGGCG TGAACGTGGG TGTGGATATC
AAAGCGGAGG AGCTGCAAAA TGAGTTCGAC GCGGTGTTGC TGACGATGGG ATCGACCGTT
CCGCGCGATG TGAAAATCGC AGGCCGTCAG TTCAAAGGCG TCCATTTCGC GATGGAATTC
CTCAGCCAGC AGAACAAGCG CGTAGCCGGT ATCGACCGCG TGGTAGATCA CCGCGGCGTG
GCTTACGCCA ATGGCGAAAT CCTCGCTACC GACAAACACG TGGTGGTAAT CGGCGGTGGC
GATACAGGTT CCGACTGCGT GGGTACTTCG GGCCGTCACG GTGCGAAATC CGTTACGCAG
ATCGAGCTGA TGCCTATTCC TCCAAAAGAG CGCGATGCAA GCACACCATG GCCGAACTGG
CCGATGATGC TCCGTACGTC TACTTCACAC GAAGAAGGCT GCGACAGACA TTGGTCTATC
AACACCAAAG AATTTATCGG TGACGAAAAC GGTAACCTCA CCGCATTGAA GATCGTAGAC
CTCGACTGGC AGAAAGACCC TGAAACGGGC CGTATGCAGA TGAAAGAGGT GGAAGGCAGC
GAGCGGACGA TCCCTTGCGA CCTGGCGTTC CTGGCAGCCG GCTTCCTGCA CCCGCAGCAA
GAGGGCTTAC TGAACGACCT CGACCTGGAA TTCGACGAGC GCGGCAATAT CAAAACCAAC
GGGTATCAAT CGACTTCAAA CGAGAAGATC TTCGCAGCAG GCGACTGCCG CCGCGGACAA
TCGCTGGTAG TATGGGCGAT CTCCGAAGGC CGTGAAGCGG CGCGTTCGGT GGACGAGTAC
CTGATGGGCG AGTCGTTCCT CGAAGCCAAG GCTGTATCGA TGCTGAATCC TTTATTTGCG
CACGCGTAA
 
Protein sequence
MGKPTGFLEF ERELPKKRSV EERLKDYREI ETAPTDSNSK QQAARCMDCG IPFCHNGCPL 
GNIIPEFNDA VYDENWGLAY EILASTNNFP EFTGRICPAP CEASCVLGIN KPPVAIEYIE
KSIIEKAFEL GLVKPRIPKT RTGKKVAVVG SGPAGMAAAY QLNQAGHSVV LLERADKIGG
LVRYGIPDFK LDKGIIDRRM AVMEAEGVEF RTGVNVGVDI KAEELQNEFD AVLLTMGSTV
PRDVKIAGRQ FKGVHFAMEF LSQQNKRVAG IDRVVDHRGV AYANGEILAT DKHVVVIGGG
DTGSDCVGTS GRHGAKSVTQ IELMPIPPKE RDASTPWPNW PMMLRTSTSH EEGCDRHWSI
NTKEFIGDEN GNLTALKIVD LDWQKDPETG RMQMKEVEGS ERTIPCDLAF LAAGFLHPQQ
EGLLNDLDLE FDERGNIKTN GYQSTSNEKI FAAGDCRRGQ SLVVWAISEG REAARSVDEY
LMGESFLEAK AVSMLNPLFA HA