Gene Dfer_5476 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5476 
Symbol 
ID8229088 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6604363 
End bp6605133 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content53% 
IMG OID644933320 
Producthydrolase, TatD family 
Protein accessionYP_003089832 
Protein GI255039211 
COG category[L] Replication, recombination and repair 
COG ID[COG0084] Mg-dependent DNase 
TIGRFAM ID[TIGR00010] hydrolase, TatD family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.230382 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAAA CCCACGCCCA CATATACAGC GACGATTACG CCGAAGACCG CACCGCCATG 
CTCGACCGCG CCTGGAACGC CGGTATCGAG CAGATATGGA TGCCCAACTG CGACCATGAG
ACGATCGACG GCATGCTCGA ACTCGCGGAA AAATACCCTG GCAAATGCCT CCCGATGATC
GGGCTCCACC CGACTTACGT GAAAGAGAAT TTCGAAAAGG AATTGCAGAT CATGGAAGAA
TGGCTCGGTA AATATGAGTT CATCGCCGTC GGTGAGATCG GAATGGACCT TTTTTGGGAT
GTAACATTTA AAGAGCAGCA GGAAAAGGCA TTTTTATACC AATGCGGCCT CGCGCGCAAG
CATAACCTCT GGATCGACAT TCACAGCCGG AGCGCGTTTT GGGAAACTGT CAAACTGATT
GAAGACTTCG CCGATCCGGC ATTAACGGGT ATTTTCCATT GCTTTACCGG CACGCTGGAA
GAAGCGCAGA AAGCCATTGA GCTGGGCTTC AAACTCGGCA TCGGCGGCGT GGCGACATTC
AAGAATGGCG GTTTGGATAA AGTGATCCCG CACGTTGATA TGCAGCATTT GGTACTCGAA
ACCGACGCGC CTTACCTGGC CCCCGTCCCC TATCGCGGCA AACGCAATGA AGTGGCCTAC
ATCGACATTG TGGCCCAGCG CGTAGCTGAT TTGAAAGAAA TGACCAAAGC CGACGTGATC
GCCGCGACGA CCGCGAATGC GAAAAGTATG CTTACCAAGG TCGCAAAATG A
 
Protein sequence
MIETHAHIYS DDYAEDRTAM LDRAWNAGIE QIWMPNCDHE TIDGMLELAE KYPGKCLPMI 
GLHPTYVKEN FEKELQIMEE WLGKYEFIAV GEIGMDLFWD VTFKEQQEKA FLYQCGLARK
HNLWIDIHSR SAFWETVKLI EDFADPALTG IFHCFTGTLE EAQKAIELGF KLGIGGVATF
KNGGLDKVIP HVDMQHLVLE TDAPYLAPVP YRGKRNEVAY IDIVAQRVAD LKEMTKADVI
AATTANAKSM LTKVAK