| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5459 |
|---|
| Symbol | |
|---|
| ID | 8229070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 6585373 |
|---|
| End bp | 6587622 |
|---|
| Gene Length | 2250 bp |
|---|
| Protein Length | 749 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644933302 |
|---|
| Product | signal transduction histidine kinase |
|---|
| Protein accession | YP_003089815 |
|---|
| Protein GI | 255039194 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.164522 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACGGTGC TGGCATTGCT TCTTCCGCAA CTCGCAAAAG CGGTTGAAAG CCCCCCTTCG
CTGGCCGCAC TGCGGCGACA AGTGGAACTG GCGAAAACCC CGCAGGAGAA AGCGGACAAG
CTGATTGAAA CGGGAGAATT TTACCTGCTG AAACCCGGCG AGGATCAGGA GGATATGGAC
AATGCCCGGA AGTACGCGCA GGCGGCCATG GAGATTAACC GGCAGCTTCG TTCGCACAGG
CTGGCGGGTG ATATATTGTT CCTGATGTCC CAGATCGAAA AGGAATCGGG GCGGAAAGAG
GTGGGCTTGC AAAAACTGAA AGAAGCCATT GCCGTGTACC GGAAGGCCCG ATTGACGGGG
AGTGAAGGGC TCGCGCTGAT GGAACTGCGG CATTACTATG ATTGGGCCGG GCCGGGCATG
AACGAGCGCC TCCGGATCGT GCAGGAGGCG ATTGCGCGCT TTGCCGCAGC GAAGGATACG
GTGAATGAAG CTGCCGCCTA CGTGGAGCTG GGCGACTTGT ATCAATTGCA GGAAAATGCC
ACCGATGCCA TTATTTCGCT GCGAAAGGCG ATAACGCTCT ATCAGGCGAT CGGGCATAAG
AACTTGCAAT CGGTATACAA CCTGATCGGA CATATTTATA CGGCCACCGG CGATTTGAAG
AACGGGCTGA ACTACGGGCA CCTTGCCGTG AAGACGGCTA CGGAGTTGAA AGACTCGTCT
ATGGTGGCGG CTACGACTTA CAACCGGCTG GCCGTGACCT ATTCGAAGCT CGACAGGCTG
GAAACCGCGC TCGAATTGCT CCAAAAAGCT TTGATGTTCT CTATCAAAAA CCAATGGGAC
GACGGGACGG TGCAGATCCT GGGCAATATC ATTGATTTGA GTATCAAGCG CGGCGCTAGA
ATGAATGCGC AGATTGCTTT TCTGGAAAAA TTCCTGGTGA AGAATTACAG CAAAATAACG
CCCTTCGTGC GGTATACGAT CGAGGAAGAT CTCAGGATGT TTTTTATCAA ATCCAAAAAC
ATTCCGAAAG CGAAGTATTA CCTGGATAAA TGCATGCAGT ACGAGCGGGA GGGGAACCTG
GCATTCAACA CGCACCTTTA CTACGACGCG GTGGAGTTTT ACCTGCTTAC CGGGAATGTG
AGGCTGGCCA AGGCATATCT CGCCAAAATG GAGAAGTTGA AAGACGCCGC CAACGACCCG
TTTATCTCCC AGCAATATTA CCTCGTCAGC TACAAAACCG ACTCGGCATC CGGTGATTTC
CGGAAAGCAT TCGCCAGCCA TACGCGGTAC AAAACGTATT CCGATTCCAT TCAGGAGAGA
AAATCGAAGT ACGAACTGAA AGTAATGGCG GCCCGGTACG ACCTCGAAAA CAAGGATGCC
GAAATCGCCC TCAAATCAGA GAATATCAGG CTTTTGCAAA AGGATATTGC CTCACGGAAC
GAGATCGTGA TCAGAAGTAA CCGCCTCAGG AATATCACGA TTTTCGCGAT GGTAATCCTG
GTGTTGTTGC TGCTATCGCT GTACAGCAGA AGCCGGATCA TTGAAAAGTA CAGTACAAGC
ATTGCCAAAA AGAATGGTTA TCTTCAGGAC TTGCTGAAAG AGAAGGAATG GCTGATCCGG
GAGGTCCACC ACCGGGTGAA GAATAATCTC CAGATGATCA TCAGCCTGAT CGACTCGCAG
GCATCGTACC TGAGCAACGA CGCTCTGCAC GCCGTGATGG ACAGCAAGCA CCGGATCGAG
GCGATGTCGC TGATCCACCA GAAGTTGTAT CTCACGGACA ATACATCCTC CATTAATATG
AGGATTTACA TTAAAGAGCT CGTGACGTAT TTGAAGGATA GTCTGGGTTT TAACAGAAAT
ATATCTTTCA CGACGGACGT GGACGAAATC GAACTGGACG TGTCCCATGC GACGCCGGTG
GGCCTCATCC TCAACGAAGC TATCACGAAT GCATTGAAAT ATGCCTTTCC GGGCACGATG
GCGGGGAAAA TCGATGTCAG TTTCAAATAC TGCGACGAGC GGAAAGTGTC ATTGACGATC
CAGGACTCGG GTGTGGGCCT GCCGCCGGAT TTTGACCCTG ATACGGTATC TTCCCTGGGT
ATGAGCCTTA TGTACGGGCT GGCGACCGAG GTGAGCGGTA CATTGCGCAT TACGGGCGAG
GCCGGAACCC GCGTGCTGCT GACGTTCAGC CTGCCCGACG TTTTCCTGAG CAGGTCGCCG
GGAGACGAAC TCGTGTTGTC AAACGAATAA
|
|---|
| Protein sequence | MTVLALLLPQ LAKAVESPPS LAALRRQVEL AKTPQEKADK LIETGEFYLL KPGEDQEDMD
NARKYAQAAM EINRQLRSHR LAGDILFLMS QIEKESGRKE VGLQKLKEAI AVYRKARLTG
SEGLALMELR HYYDWAGPGM NERLRIVQEA IARFAAAKDT VNEAAAYVEL GDLYQLQENA
TDAIISLRKA ITLYQAIGHK NLQSVYNLIG HIYTATGDLK NGLNYGHLAV KTATELKDSS
MVAATTYNRL AVTYSKLDRL ETALELLQKA LMFSIKNQWD DGTVQILGNI IDLSIKRGAR
MNAQIAFLEK FLVKNYSKIT PFVRYTIEED LRMFFIKSKN IPKAKYYLDK CMQYEREGNL
AFNTHLYYDA VEFYLLTGNV RLAKAYLAKM EKLKDAANDP FISQQYYLVS YKTDSASGDF
RKAFASHTRY KTYSDSIQER KSKYELKVMA ARYDLENKDA EIALKSENIR LLQKDIASRN
EIVIRSNRLR NITIFAMVIL VLLLLSLYSR SRIIEKYSTS IAKKNGYLQD LLKEKEWLIR
EVHHRVKNNL QMIISLIDSQ ASYLSNDALH AVMDSKHRIE AMSLIHQKLY LTDNTSSINM
RIYIKELVTY LKDSLGFNRN ISFTTDVDEI ELDVSHATPV GLILNEAITN ALKYAFPGTM
AGKIDVSFKY CDERKVSLTI QDSGVGLPPD FDPDTVSSLG MSLMYGLATE VSGTLRITGE
AGTRVLLTFS LPDVFLSRSP GDELVLSNE
|
|---|
| |