Gene Dfer_5452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5452 
Symbol 
ID8229063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6577026 
End bp6577868 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content45% 
IMG OID644933295 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003089808 
Protein GI255039187 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.662844 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.250366 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAATG TAGCATTACC CATTTTCAAT GCACAGACCC TGGATAATGG TTATGCATTG 
AAAACGCCGC ACCTGACCGG CCCCATTCAG CAGGTGATTG AGCTATATTG GATTGGAAAA
GGGAAAGGGA ATATCACGAT CGACTTTTTG AAAACAAATT TTTCCGGAAA TACCCTGTTT
TTCGTTTTGC CGGGCCAGAT CCACCAGATC AACGCGGAAA CTGAATTGAT TGGTAAAAAA
ATTACTTTCT CATTGGATTT GCTTACGGCG GGTGATGGTT TCATTGATGA AGCGGGCAAA
GCCGGTTATT TCACACGTTT ACAGCATGCA GAAGTCGTGA CATTCGACGA AGAAACTGCG
AGAGAAATCA ACGAAATTTT TGAAATTATT TTACTCGAAA TGGCGCGTTG CGAAGACAAT
AAAAACGAAA TGCTGGGCGC ATTACTCGCC CTGTTAATTT CCTACATCCC GCATTCAAAT
GACCAGACCC CGGAAGGTTT GGCATTCAGA AACCCCGACA TCGTTTTCCG GAAGTTTATA
TCTAAAATCG ACGCGCATTT CCGGACGCAA AAGCAGGTGT TTTATTACGC ATCGGAACTG
GCAATCACGC CCAATTACCT GAGCGAAATT TCCAAGAAAG TTTCAGGCTT TTCCGCCCGG
CACCACATTC ATCAGCGTGT GGTGTTGGAG GCAAAGCGGA AGGGTATGAC GACTGATCTG
AATGCAAAAC AAATCGGATT TGAATTGGGA TTCGAAGATC CGTCGACATT CAGCAAGTTC
TTCCGGATCA TGACCGGCGA AAGCTTTTCA GATTTCAGAA AAAAGGAAGT GTGCCTGGGT
TGA
 
Protein sequence
MENVALPIFN AQTLDNGYAL KTPHLTGPIQ QVIELYWIGK GKGNITIDFL KTNFSGNTLF 
FVLPGQIHQI NAETELIGKK ITFSLDLLTA GDGFIDEAGK AGYFTRLQHA EVVTFDEETA
REINEIFEII LLEMARCEDN KNEMLGALLA LLISYIPHSN DQTPEGLAFR NPDIVFRKFI
SKIDAHFRTQ KQVFYYASEL AITPNYLSEI SKKVSGFSAR HHIHQRVVLE AKRKGMTTDL
NAKQIGFELG FEDPSTFSKF FRIMTGESFS DFRKKEVCLG