Gene Dfer_5404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5404 
Symbol 
ID8229015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6524522 
End bp6525610 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content52% 
IMG OID644933249 
Productsignal transduction histidine kinase, LytS 
Protein accessionYP_003089762 
Protein GI255039141 
COG category[T] Signal transduction mechanisms 
COG ID[COG3275] Putative regulator of cell autolysis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones48 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.597323 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCCTT ATCTTTTCGG GCAAAAATGG CTGCTGGGTT TCGCCCTTGC ACTGGTTTAC 
ATTCCGCTCC GAACATATAT CAATGTACCT CAGCAGAATT GGAACACGAT ACCACGGAAC
CTGCCGCTTT TCGGGCTTGA AATCGTGATC AGTACCGTTT TCTATACCGC CTGGATTTAC
CTGATGGACT GGTTTTTAAG AAAGCAGGCC TCCCTAAGCG GTGCCGATAA ATCACCCGCG
TTCAGCATCC GCGACCAGCT CATCACCCTC ATTCCGGCGG TGCTGCTGGC ATTCCTTTTC
AATATGATGC TGGCCCGGAC GTGGGGCCTC ATGAGCCAAT GGTGGAACCC GCTGCCCAGG
CCGGTAATGA GCGATCCGCG CGTGCGCGAC CTCATGTACA CGCGCTGGCG GGCAGGCCAG
GCGCTCACGA TCCTCGCGCT CATTGCGGCC TATTACCTTT GCGTGAGCAT TCAGGTGCAG
GAAAAAATGA AAAAGCTCCT CGTAAGCTCG GAAAGGCTGG AAAAGGAGAA TATGCACGCG
CGTTTTCTGG CATTGAAAAA CCAGGTGAGC CCCCATTTTT TGTTCAATAA CCTCAGCGTG
CTGTCGTCGC TGGTGGAATC GAGGCCGGAG CAGTCGGGGG AGTTTATACA GGAATTGTCC
TCGGCGTACC GCTACATTCT CGAACAATCG GAGCTGGATA AGATCAGTTT AAAGGAGGAA
ATGCGGTTTC TGGACACTTA TATGTACCTG CTGCGGACGC GTTTCAAGGA AAAAGTGGTG
CTCGACTCCC GGCTCACCCC GGCGGAACAG GAGCGGTATG CGATTATTCC GCTTACTTTG
CAGCTGTTGG TCGAAAATGC CGTGAAACAT AACACCATGT CGGTAGTTAA TCCTTTGATT
ATCAGTATTT CAATTATGGA TCAAATGCTT GTCGTGAGCA ATCCGCTGCA GCTCCGGCAG
CAGGACCAGC CTACGACGCG CCTCGGATTG AAGAATATTA TCAGCCGGTA TAAACTGTTG
CAGGACAAGG ATGTGGTGAT CGAACAAACT GCCATGCATT TTACCGTTAA AATCCCCCTG
ATGTCATGA
 
Protein sequence
MRPYLFGQKW LLGFALALVY IPLRTYINVP QQNWNTIPRN LPLFGLEIVI STVFYTAWIY 
LMDWFLRKQA SLSGADKSPA FSIRDQLITL IPAVLLAFLF NMMLARTWGL MSQWWNPLPR
PVMSDPRVRD LMYTRWRAGQ ALTILALIAA YYLCVSIQVQ EKMKKLLVSS ERLEKENMHA
RFLALKNQVS PHFLFNNLSV LSSLVESRPE QSGEFIQELS SAYRYILEQS ELDKISLKEE
MRFLDTYMYL LRTRFKEKVV LDSRLTPAEQ ERYAIIPLTL QLLVENAVKH NTMSVVNPLI
ISISIMDQML VVSNPLQLRQ QDQPTTRLGL KNIISRYKLL QDKDVVIEQT AMHFTVKIPL
MS