| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5371 |
|---|
| Symbol | |
|---|
| ID | 8228982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 6494425 |
|---|
| End bp | 6495330 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644933216 |
|---|
| Product | cobalamin biosynthesis protein CobD |
|---|
| Protein accession | YP_003089729 |
|---|
| Protein GI | 255039108 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
|---|
| TIGRFAM ID | [TIGR00380] cobalamin biosynthesis protein CobD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTATC TGCTGGATCT GTGGCTCGGC GATCCCGATT ACTGGCCACA CCCCGTCCGC
GTGTTCGGGA ATGCGATCGC GTGGGGGGAA AAGCGGCTGA ACGGGGGGCG GTACCGGTTT
TTGAAAGGTG CATTATTAAG CTGTTGTCTC GTCGCGCTGG TGTTTCTGGT GTTTTATGGG
ATAAATGTCT TTTTGCTGAA TATCAAGGTT TTATATGTGT TGTTTAACGG CATGTTTGTT
TACTACGGGC TGGCTAATCA TTCACTTATC GCCGAAGGAA GGAAGGTTTT TGCGGTTCTT
GAAAACGATG GTTTGGAGGC AGGCAGAAAG CAGGTTGGCA GGATCGTAGG GCGGGATACT
TCGCGGCTGA GCCCGCAGCA AATCCGCATT GCAGCGCTCG AAACGATGTC CGAAAACCTG
AGTGACGGCG TTGTCGCGCC GCTTTTTTAC TATGCCCTGG CCGGTGTGCC GGGCATGATG
GCCTACAAGA TGATCAACAC GATGGATTCG ATGCTTGGTT ATCGGAACGA GCGGTATGAG
AGGTTCGGGA AATTTGCGGC CCGGCTGGAT GATGTTGCCA ACTTTATCCC GGCCAGGCTT
ACCGCTTTGC TCATGGCACT GGTGGCCGGC AGCGGGCGGG CCGTCAGTTT CCTGTTCGAA
TATGGCCCCC GGCACAAAAG CCCCAACGCC GGCTATCCTG AAGCCGCGCT TGCTGGCATT
TTGAACTGCC GCTTCGGCGG CCCGAATGTG TATCACGGCA GGGTGGTGGA GAAGCCATTC
ATCGGAGAAG CGGACCGGGA GATACAGCAC GGCGATGTCC GTACGGCGGC CAATGTGAAT
CATCGGACGT GCCTGACGAT GGTGCTCATG ATCACGCTAG GCAGTTTGAT TTTTTATTTA
ACCTGA
|
|---|
| Protein sequence | MGYLLDLWLG DPDYWPHPVR VFGNAIAWGE KRLNGGRYRF LKGALLSCCL VALVFLVFYG
INVFLLNIKV LYVLFNGMFV YYGLANHSLI AEGRKVFAVL ENDGLEAGRK QVGRIVGRDT
SRLSPQQIRI AALETMSENL SDGVVAPLFY YALAGVPGMM AYKMINTMDS MLGYRNERYE
RFGKFAARLD DVANFIPARL TALLMALVAG SGRAVSFLFE YGPRHKSPNA GYPEAALAGI
LNCRFGGPNV YHGRVVEKPF IGEADREIQH GDVRTAANVN HRTCLTMVLM ITLGSLIFYL
T
|
|---|
| |