| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5332 |
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| Symbol | |
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| ID | 8228943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 6439487 |
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| End bp | 6442216 |
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| Gene Length | 2730 bp |
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| Protein Length | 909 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644933177 |
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| Product | PKD domain containing protein |
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| Protein accession | YP_003089690 |
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| Protein GI | 255039069 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0649636 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.493539 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAGAT CTACATTTGG GTTATTGGTG GCTGCGGGGC TTTGTGTGGC TTCGGTAGGG
CGGTATGACC GGCCGTTGTT CAGGGAGGTA GTGGGTAATC CGGACGGCGG TGGTGCTGTT
CGGGCGGGGG GAGCCGTGCA GTTGGAAGGG CCGGATTCGA GCCGGTTTAC GTATACCAAA
CTCGTTTCAG GGCTGGATGA GCCGATGGGG ATGGCGATAC TGCCGAATTT TGATGTCGTG
GTGGCGGAGC GGAAAGGGGC TGTCCGGTAC TTCAACAATG CTACCAAGGA AGTTTCGACC
ATTGCGCAGT TCAATGTTTT CAGCGGCATC GAGGATGGTT TGCTGGGCGT GGCTGCCGAC
CCGGATTTTA AGAACAACAA CTGGATTTAC TTCTATTACG GCGTGGGCGG CGAGAAAAGC
GTGAGCCATC TCGCACGGTT TGAGCTGAAA GGGCAGAAAC TGAATCAGCA GTCGAAAAAA
GTGCTGCTCG AAGTGCCCAC GCAGCGGCAA TATTGCTGCC ATTCCGCCGG TCATATCACC
TTTTCGGACG GCCTGCTCTA TTTATCAATC GGCGACAATA CCAATGCTGA GGAAATAGAA
GGCCACACGC CGATCGACGA GCGCCCCGGT CGCGAACTGT CCGATGACCA GGCCGCTACC
GCCAACAGCA ACGATTACCG GGGCAAAATT CTGCGGATCA AGCCCGAGGC CGATGGCACT
TACAGCATTC CCGACGGAAA CCTTTTTCCG AAGGACGGTT CGCAGGGAAA GCCGGAGATC
TACGCCATGG GCGTTCGTAA CCCGTTCCGC ATTTCAGTTG ACCCGAAAAC AAAGTTTCTG
TACTGGGGCG ACGTCGGTCC GGATACCGAA GTGCCTGGTA GCGAGGGAAA AATGAGCTAC
GACGAGATCA ACCAGGCGCG GAAGCCCGGG TTTTTTGGCT ACCCCTATTT CCTGGGCGAT
AACGAGGTGT TTCCCGACTA CGACTTTGCT ACCAAAAAAG AAGGTCCGGG TAAAGACCCG
CAAAAGCCGG TGAACGATTC GCCGCATAAC ACGGGCATCC GCGACCTGCC GCCTGCGCAG
CCGGCGTTTA TCTGGTATGG GAAAGGGCCT TCCAAAAAAT ACCCGCTGGT AGGAAAAGGA
GGGGCGAGCG CGATGGCCGG GCCGGTGTAT TACAGCGACT TGTACCCCAA TGCCCCCTAT
AAGCTCCCCG AATATTACAA TGGCAAGCTG TTTATTTTTG AATGGATCAG GAAGTGGATC
ATGGCCGTAA CCATGGACGC CAATGGCGAC TATGTGGCTA TGGAGCCGTT CCTGCCCCAG
TTGAAAGTGG TCGCGCCCAT CGACATGCAG ATCGCCCGCG ATGGCGCCAT CTACCTGCTG
GCCTACGGTA CCAACTGGTT TGCCCGGAAC ACCGATTCGG GCATTATCCG CGTGGAATAT
ACCGAAGGTA ACCGCAACCC CATTGCGGCA GTTTCTACCG GCAAAACAAT CGGTGCTGCA
CCGTTTAAGG CTACACTTTC GGCCAAAGGA TCGAAGGACT ACGATGCGGC CGACAAGCTG
ACTTATGAAT GGAAAATCGG GACGAAAAAG CTGGCGGGTG AGGAAATCAC GCATACTTTC
ACCAAACCAG GCACCTACAA TGTGGTCCTG ACCGTTTCCG ACCAGCACGG CGGCAAAGGC
ACAGCCACAA CCGAATTCAA GATCGGTAAC ACGCCGCCAG ACGTGAAAAT CGAGACGACC
GCAAACCGGA GCTTTTATTG GGACAATGCA CCATTTAATT ACACCATTAA AGTAACCGAT
AAAGAAGACG GCAAGATCCA GCGGTCGCGC ATCCACGCCG GGTTCACTTA CCTGGCATTT
GGGAAAGACC TGGCCGGTGC ATTGTCGGGC GGGGAAGGGG AGAATATCCG CTATGCCGCC
ACGGCTAAGC TGTACGCGTC GCTCGATTGC AAAGCCTGCC ACACGATGGA AACCAAATCC
ATTGGTCCGG CTTTGAAAGA AATCTCAAAG AAATACGCCT CGGACACAGG CGCGGAGCGT
ATGCTTGCAC GGAAAATCAT CACCGGCGGA AGCGGTAACT GGGGTTCTTA CCCGATGCCC
CCGCATGCCG ATTTGCCCGA GAAAGATGCG CGCGAAATTG CCGGTTATAT TCTGTCGCTG
TCGAAAACTA CCGGCCCGAC ACCGCTCTCT GCGCAGCTGA AACTGACCGA GCATATCGGC
AAGGGAACGG AAGGCGCCTA TGTATTGCAG GCTTCGTACA CCGACAATGG CGCAAACGGA
ATAGGCCCCC AGAAAACCGC CAGCCACATT GTGCTGCGCA ATCCGCTCAT CCAGATGGAG
GATTACCAGG AAGGCAACGT AGGCGTGGTG ATTGCCACGC AGCATACGGG TTACGTATCC
TACATTGCCA ATATTACCAA TGGAAAATAC ACCAGGTTCA ACCAGATCGA CCTTTCGCAC
ATTAAGAACA TTCGATTGCG CATTCAGGAA CATGGCGCGG GCGGAACCAT CGAGCTGCGG
CAGGGGAGCA GGGATGGGCA GTTGCTGGGC AAAACAGAAG TCCCCGGCGG ACGCCTGGAA
GACCTGAAAA CCGGTTGGAA AGAAATTTTA CTGCCGGTGA ACGGCGGTGC GGGCGTTCAT
GACCTTTTTC TGGTGTTCAA AAACGAAAAG TTTAAGAGCC CCATGTTCCA TATTGACTGG
ATGTATTTCG AAAGCGATTT TAACCCTTAA
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| Protein sequence | MFRSTFGLLV AAGLCVASVG RYDRPLFREV VGNPDGGGAV RAGGAVQLEG PDSSRFTYTK
LVSGLDEPMG MAILPNFDVV VAERKGAVRY FNNATKEVST IAQFNVFSGI EDGLLGVAAD
PDFKNNNWIY FYYGVGGEKS VSHLARFELK GQKLNQQSKK VLLEVPTQRQ YCCHSAGHIT
FSDGLLYLSI GDNTNAEEIE GHTPIDERPG RELSDDQAAT ANSNDYRGKI LRIKPEADGT
YSIPDGNLFP KDGSQGKPEI YAMGVRNPFR ISVDPKTKFL YWGDVGPDTE VPGSEGKMSY
DEINQARKPG FFGYPYFLGD NEVFPDYDFA TKKEGPGKDP QKPVNDSPHN TGIRDLPPAQ
PAFIWYGKGP SKKYPLVGKG GASAMAGPVY YSDLYPNAPY KLPEYYNGKL FIFEWIRKWI
MAVTMDANGD YVAMEPFLPQ LKVVAPIDMQ IARDGAIYLL AYGTNWFARN TDSGIIRVEY
TEGNRNPIAA VSTGKTIGAA PFKATLSAKG SKDYDAADKL TYEWKIGTKK LAGEEITHTF
TKPGTYNVVL TVSDQHGGKG TATTEFKIGN TPPDVKIETT ANRSFYWDNA PFNYTIKVTD
KEDGKIQRSR IHAGFTYLAF GKDLAGALSG GEGENIRYAA TAKLYASLDC KACHTMETKS
IGPALKEISK KYASDTGAER MLARKIITGG SGNWGSYPMP PHADLPEKDA REIAGYILSL
SKTTGPTPLS AQLKLTEHIG KGTEGAYVLQ ASYTDNGANG IGPQKTASHI VLRNPLIQME
DYQEGNVGVV IATQHTGYVS YIANITNGKY TRFNQIDLSH IKNIRLRIQE HGAGGTIELR
QGSRDGQLLG KTEVPGGRLE DLKTGWKEIL LPVNGGAGVH DLFLVFKNEK FKSPMFHIDW
MYFESDFNP
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