Gene Dfer_5330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5330 
Symbol 
ID8228941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6434056 
End bp6437589 
Gene Length3534 bp 
Protein Length1177 aa 
Translation table11 
GC content54% 
IMG OID644933175 
ProductTonB-dependent receptor 
Protein accessionYP_003089688 
Protein GI255039067 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4771] Outer membrane receptor for ferrienterochelin and colicins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000015057 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0697872 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGAC TGATTACCAC ACTTCACCTG ATCGCCATCT GCCTCTGCGC CGTGCCCCGG 
GCAGAGGCGC AGCCGGTCGC CCTGTCGAGG CTCGAACCGG GCGGTCGTCC CGACGTCCGG
CCTCGCCAAG CGGTATCCCT CGAAACAAAA TTGCGGGCCC TGGAAAAGCA GTTTCAAGTG
TCTTTCCTGT ACAACTCGGA GTATGTCAAC GGCAAAACCG TGAAGGAAAT GGGCAAGGCT
GGCTCGCTGG AAAATTCGTT GCGCAAAATC CTTGAACCAA ATAACCTGGC ATTCAAGAAG
CTGCGTGATA ATTTTTACGT GATCTACATT AAAGACGAGG CCGGCGAAAA GGAAGGTGAC
CGCCCTGCAA CGGAGCCCGG CACCCTGTTG AAGCAGCAGC CGACCGGACA ATTGCCCGCC
ACCCAGCCCG TGAATACACT GGCTTCGCTA TTCAAAGGCC CGGCAATGCG CAAGGCGGCC
GACATGGCCC TTACGGTTTC GGGCGTGGTG GCGGATGCTG TCACCGGCGA GCCGCTGCCC
GGCGCGAGTG TGATCGTGAA AGGCACGGGA ATCGGCACGA CCACCAACGG CGACGGTCGG
TATGAACTGC CGAATGTGCC TGAAAATGCG ACGCTTGTGT TTTCGTTCAT CGGGTATTTG
TCGTCCGAGT CGGCCGTGGA AAACCGATCG GTAATTGATA TGAAGCTTTC GGCCGACTCC
AAGTCGCTTT CGGAAGTGGT AGTTGTCGGC TACGGAACGG TGTCCAAAAA GGATGTGACC
GGCTCGGTAG CTTCAATCGG AGGTGACGAA ATCCGCAATA TGCCCGTTCG CTCGGCGGCG
GATGCATTGC AGGGCAAGGC GGCCGGCGTG ATGGTAACGC AGGCGAGCGG CAGCCCGGGC
TCCGCGGGGG TGGTGCGTAT ACGCGGAATC GGTTCGATTA ATAACTCCAA CGAGCCGCTT
TACATCGTCG ATGGCCTCCC GCAAACCAGC ATCGGCTGGC TGAACCCGAA CGACATCGAA
ACGATGGATA TTCACAAGGA CGCTTCGGCG GCGGCAATCT ACGGCTCGCG CGCATCCAAC
GGATTGGTGA TCATTACCAC CAAAAAAGGG GCCAAATCGG AGTCGGTGAG CGTTTCGTTC
GATAGTTACT ATGGCTTGCA ATCGCCCTGG AAGCGTCCGC ACATGCTGAA TGCGCAGGAA
TTTATCACCT ACAAAAACCG GGCTGCGGAG GCTGTGGGCG TTACGCCGCC GATTTCGCCG
GATATGCAAA CGCAGGCGCT CAATTTCGTG CGGACCAATA CCGGGCCGGA AGGAACCGAC
TGGTGGAAGC AGATCATGCA CCAGAATGCA CCCGTGCAGA GCTACAATAT CACGGTTTCG
GGAGGCAGTA AAAAGGTCGA TTTCGCTTCT GCATTGGGTT ATATGGATCA GAAAGGCATC
GTTCGCGGCT CGGATTACCG CCGTATTTCA TGGCGGAACA ATGTTAATGC GGAAATCAAC
GACCGCGTTC GGCTGGGCAG CAACATTGCC GTGGTGTATG AAAGTCGCCG CAATATCGAT
GAGAACAATC CGTATTCCGG CACCATTTTC AGTGCCATGA CCGCCGACCC GATCACGCCG
GTTTACCGGG ATAACCTGAA AGATATCCCT CCTTTTTATC AAACCATCAT GCAGGGCTAC
GACGCCAGTA ACCCGTTCTC GCGTTACGCC GGCATTTTGT ATTCCAACAA ACCGAACCCT
GTGGGCCAGA TCGAGCGGAT GCGCCAGAGC ATTTGGGAGG GGATCAGCAT GAAGGGCGGT
GCGAACCTCG AAGTGAAGAT TTTTGAACCC CTCAAATTCC GCAGCAACTT TGGGCTGGAC
GTTCACAGGG GCCTTTCCAA AGGTTTTACG CCGCAATACT ACCTGAATGG CTACGATTAC
GCGACCTACA ACACCGTGAG CAATTATTCC TACTGGTCTA ATTACTTCGT TTGGGAAAAT
ACGCTGGCGT TTGATCAGGC CTGGGGGCAG CACCGCCTCA ATGTGCTCGC GGGTACTTCC
GCGGAGTTGA CGAAAGGCCT GGAATATGGT GCTTCGAAAC AGGGAGTTGT TAATAATGAG
GAAGATATGC GGATTATCAA TGCAGCTACC ATCAATCCCG GGGCCTCGGG TTACACCTAT
TCCAATGCAT TGAACTCCTA CTTCGGGCGG GTGAGCTATT CCTTCGGCGG TAAATACGTG
CTCACGGCGA ACGTGCGGCG CGACGGCACC TCACGTTTTG CGAAAGACTA CCGCTGGGGG
ACATTTCCGT CGGTATCGGC AGCCTGGAAC TTTACCAATG AAGGGTTTTT TAAAGATGCG
GGCCTGAAAT GGCTGTCGGA AGGTAAGTTA CGGGCCAGCT ACGGCCAGAT CGGCAACCAG
AACGTGGCGA ACGGCGCTTA TTTATCAACC TACGCGAACA ACAACCGCTA CCTTTTCGGC
GACAATAAAA CATGGTACAT GGGCGCAGGA CGCAATAGCA TCGGCAACCC GATCCTGCAA
TGGGAAACGT CCAACCAAAC CGACATCGGG CTCGACCTGG CGTTTTTGAA TCATAAACTC
ACACTTACGG CCGATTATTT CAAAAAGGCG GTCGATAATA TGCTGCTGAT CGTGCCCCTG
CCTACCACGC TCGGCTATCC TAACTTTCCG TGGTCGAATG CGGGCAAGAT GGTCAACAAA
GGTTGGGATT TTGCGATTGG TTATGATGAT GAAGTGGCTG GTTTTCAATA TGGTATCAAA
GCCACGCTCT CTACATTCAC GAACAAGGTA ACGACCCTTG GAGGCGGCGA GCCGATTTAC
TCCACGGCCC ACCTCGGTGA AACCATCACC AAAACCGAAG AAGGAATGCC GGTAGGTTAC
TATTTCGGAT GGCTCACCGA CGGTATTTTC CAAACCCAGG ACGAGGTGGA TGCAAGCGCG
CAAAAAGGCC TGTCGACGCC CGGGGACATT CGTTTCCAAA ACATCAATGG CGACCAGTTG
CTAAATGCAG ACGACCGTAC GAAAATCGGT AATCCGTGGC CGGACTTTAT TTACGGATTA
ACGGTGAATG CTGCCTACAA GGGGTTCGAT ATCAGCGCTT TCGTGCAGGG GTCGCAGGGT
AATGATGTGA TGAATATCCT GCGCTACGAT ACCGAGGCTG GAACCGGCTG GTACAATGCG
CCAAAGGGTT TTCTGGAAAA GGCGTGGAGC GGCCCCGGCA GTACCAACGA ATACTACAAA
ATCTCCCAGA ATGCGGGTTT GAATACCAAT GTTTCCAAGT ATTTCGTGGA GGATGGCTCC
TACCTGCGCA TGAAAAACGT GCAGATCGGG TACAGCCTGC CGGGAGGTTT ACTGCAAAAG
GCGAAAATAA AGCAGGTGAG GTTTTATGTA GGTGCGCAAA ACCTCTTTAC CGTAACCAAA
TACAGTGGTC TGGACCCGGA AATGGGCTCG ACGGACCCCA AGCTGACGGG CATCGACCAG
GGATTTTTCC CGCAGGCCCG TACATGGATG TTTGGTATCA ATGCAAAATT CTAA
 
Protein sequence
MKRLITTLHL IAICLCAVPR AEAQPVALSR LEPGGRPDVR PRQAVSLETK LRALEKQFQV 
SFLYNSEYVN GKTVKEMGKA GSLENSLRKI LEPNNLAFKK LRDNFYVIYI KDEAGEKEGD
RPATEPGTLL KQQPTGQLPA TQPVNTLASL FKGPAMRKAA DMALTVSGVV ADAVTGEPLP
GASVIVKGTG IGTTTNGDGR YELPNVPENA TLVFSFIGYL SSESAVENRS VIDMKLSADS
KSLSEVVVVG YGTVSKKDVT GSVASIGGDE IRNMPVRSAA DALQGKAAGV MVTQASGSPG
SAGVVRIRGI GSINNSNEPL YIVDGLPQTS IGWLNPNDIE TMDIHKDASA AAIYGSRASN
GLVIITTKKG AKSESVSVSF DSYYGLQSPW KRPHMLNAQE FITYKNRAAE AVGVTPPISP
DMQTQALNFV RTNTGPEGTD WWKQIMHQNA PVQSYNITVS GGSKKVDFAS ALGYMDQKGI
VRGSDYRRIS WRNNVNAEIN DRVRLGSNIA VVYESRRNID ENNPYSGTIF SAMTADPITP
VYRDNLKDIP PFYQTIMQGY DASNPFSRYA GILYSNKPNP VGQIERMRQS IWEGISMKGG
ANLEVKIFEP LKFRSNFGLD VHRGLSKGFT PQYYLNGYDY ATYNTVSNYS YWSNYFVWEN
TLAFDQAWGQ HRLNVLAGTS AELTKGLEYG ASKQGVVNNE EDMRIINAAT INPGASGYTY
SNALNSYFGR VSYSFGGKYV LTANVRRDGT SRFAKDYRWG TFPSVSAAWN FTNEGFFKDA
GLKWLSEGKL RASYGQIGNQ NVANGAYLST YANNNRYLFG DNKTWYMGAG RNSIGNPILQ
WETSNQTDIG LDLAFLNHKL TLTADYFKKA VDNMLLIVPL PTTLGYPNFP WSNAGKMVNK
GWDFAIGYDD EVAGFQYGIK ATLSTFTNKV TTLGGGEPIY STAHLGETIT KTEEGMPVGY
YFGWLTDGIF QTQDEVDASA QKGLSTPGDI RFQNINGDQL LNADDRTKIG NPWPDFIYGL
TVNAAYKGFD ISAFVQGSQG NDVMNILRYD TEAGTGWYNA PKGFLEKAWS GPGSTNEYYK
ISQNAGLNTN VSKYFVEDGS YLRMKNVQIG YSLPGGLLQK AKIKQVRFYV GAQNLFTVTK
YSGLDPEMGS TDPKLTGIDQ GFFPQARTWM FGINAKF