Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_5330 |
Symbol | |
ID | 8228941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 6434056 |
End bp | 6437589 |
Gene Length | 3534 bp |
Protein Length | 1177 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644933175 |
Product | TonB-dependent receptor |
Protein accession | YP_003089688 |
Protein GI | 255039067 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000015057 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0697872 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGAC TGATTACCAC ACTTCACCTG ATCGCCATCT GCCTCTGCGC CGTGCCCCGG GCAGAGGCGC AGCCGGTCGC CCTGTCGAGG CTCGAACCGG GCGGTCGTCC CGACGTCCGG CCTCGCCAAG CGGTATCCCT CGAAACAAAA TTGCGGGCCC TGGAAAAGCA GTTTCAAGTG TCTTTCCTGT ACAACTCGGA GTATGTCAAC GGCAAAACCG TGAAGGAAAT GGGCAAGGCT GGCTCGCTGG AAAATTCGTT GCGCAAAATC CTTGAACCAA ATAACCTGGC ATTCAAGAAG CTGCGTGATA ATTTTTACGT GATCTACATT AAAGACGAGG CCGGCGAAAA GGAAGGTGAC CGCCCTGCAA CGGAGCCCGG CACCCTGTTG AAGCAGCAGC CGACCGGACA ATTGCCCGCC ACCCAGCCCG TGAATACACT GGCTTCGCTA TTCAAAGGCC CGGCAATGCG CAAGGCGGCC GACATGGCCC TTACGGTTTC GGGCGTGGTG GCGGATGCTG TCACCGGCGA GCCGCTGCCC GGCGCGAGTG TGATCGTGAA AGGCACGGGA ATCGGCACGA CCACCAACGG CGACGGTCGG TATGAACTGC CGAATGTGCC TGAAAATGCG ACGCTTGTGT TTTCGTTCAT CGGGTATTTG TCGTCCGAGT CGGCCGTGGA AAACCGATCG GTAATTGATA TGAAGCTTTC GGCCGACTCC AAGTCGCTTT CGGAAGTGGT AGTTGTCGGC TACGGAACGG TGTCCAAAAA GGATGTGACC GGCTCGGTAG CTTCAATCGG AGGTGACGAA ATCCGCAATA TGCCCGTTCG CTCGGCGGCG GATGCATTGC AGGGCAAGGC GGCCGGCGTG ATGGTAACGC AGGCGAGCGG CAGCCCGGGC TCCGCGGGGG TGGTGCGTAT ACGCGGAATC GGTTCGATTA ATAACTCCAA CGAGCCGCTT TACATCGTCG ATGGCCTCCC GCAAACCAGC ATCGGCTGGC TGAACCCGAA CGACATCGAA ACGATGGATA TTCACAAGGA CGCTTCGGCG GCGGCAATCT ACGGCTCGCG CGCATCCAAC GGATTGGTGA TCATTACCAC CAAAAAAGGG GCCAAATCGG AGTCGGTGAG CGTTTCGTTC GATAGTTACT ATGGCTTGCA ATCGCCCTGG AAGCGTCCGC ACATGCTGAA TGCGCAGGAA TTTATCACCT ACAAAAACCG GGCTGCGGAG GCTGTGGGCG TTACGCCGCC GATTTCGCCG GATATGCAAA CGCAGGCGCT CAATTTCGTG CGGACCAATA CCGGGCCGGA AGGAACCGAC TGGTGGAAGC AGATCATGCA CCAGAATGCA CCCGTGCAGA GCTACAATAT CACGGTTTCG GGAGGCAGTA AAAAGGTCGA TTTCGCTTCT GCATTGGGTT ATATGGATCA GAAAGGCATC GTTCGCGGCT CGGATTACCG CCGTATTTCA TGGCGGAACA ATGTTAATGC GGAAATCAAC GACCGCGTTC GGCTGGGCAG CAACATTGCC GTGGTGTATG AAAGTCGCCG CAATATCGAT GAGAACAATC CGTATTCCGG CACCATTTTC AGTGCCATGA CCGCCGACCC GATCACGCCG GTTTACCGGG ATAACCTGAA AGATATCCCT CCTTTTTATC AAACCATCAT GCAGGGCTAC GACGCCAGTA ACCCGTTCTC GCGTTACGCC GGCATTTTGT ATTCCAACAA ACCGAACCCT GTGGGCCAGA TCGAGCGGAT GCGCCAGAGC ATTTGGGAGG GGATCAGCAT GAAGGGCGGT GCGAACCTCG AAGTGAAGAT TTTTGAACCC CTCAAATTCC GCAGCAACTT TGGGCTGGAC GTTCACAGGG GCCTTTCCAA AGGTTTTACG CCGCAATACT ACCTGAATGG CTACGATTAC GCGACCTACA ACACCGTGAG CAATTATTCC TACTGGTCTA ATTACTTCGT TTGGGAAAAT ACGCTGGCGT TTGATCAGGC CTGGGGGCAG CACCGCCTCA ATGTGCTCGC GGGTACTTCC GCGGAGTTGA CGAAAGGCCT GGAATATGGT GCTTCGAAAC AGGGAGTTGT TAATAATGAG GAAGATATGC GGATTATCAA TGCAGCTACC ATCAATCCCG GGGCCTCGGG TTACACCTAT TCCAATGCAT TGAACTCCTA CTTCGGGCGG GTGAGCTATT CCTTCGGCGG TAAATACGTG CTCACGGCGA ACGTGCGGCG CGACGGCACC TCACGTTTTG CGAAAGACTA CCGCTGGGGG ACATTTCCGT CGGTATCGGC AGCCTGGAAC TTTACCAATG AAGGGTTTTT TAAAGATGCG GGCCTGAAAT GGCTGTCGGA AGGTAAGTTA CGGGCCAGCT ACGGCCAGAT CGGCAACCAG AACGTGGCGA ACGGCGCTTA TTTATCAACC TACGCGAACA ACAACCGCTA CCTTTTCGGC GACAATAAAA CATGGTACAT GGGCGCAGGA CGCAATAGCA TCGGCAACCC GATCCTGCAA TGGGAAACGT CCAACCAAAC CGACATCGGG CTCGACCTGG CGTTTTTGAA TCATAAACTC ACACTTACGG CCGATTATTT CAAAAAGGCG GTCGATAATA TGCTGCTGAT CGTGCCCCTG CCTACCACGC TCGGCTATCC TAACTTTCCG TGGTCGAATG CGGGCAAGAT GGTCAACAAA GGTTGGGATT TTGCGATTGG TTATGATGAT GAAGTGGCTG GTTTTCAATA TGGTATCAAA GCCACGCTCT CTACATTCAC GAACAAGGTA ACGACCCTTG GAGGCGGCGA GCCGATTTAC TCCACGGCCC ACCTCGGTGA AACCATCACC AAAACCGAAG AAGGAATGCC GGTAGGTTAC TATTTCGGAT GGCTCACCGA CGGTATTTTC CAAACCCAGG ACGAGGTGGA TGCAAGCGCG CAAAAAGGCC TGTCGACGCC CGGGGACATT CGTTTCCAAA ACATCAATGG CGACCAGTTG CTAAATGCAG ACGACCGTAC GAAAATCGGT AATCCGTGGC CGGACTTTAT TTACGGATTA ACGGTGAATG CTGCCTACAA GGGGTTCGAT ATCAGCGCTT TCGTGCAGGG GTCGCAGGGT AATGATGTGA TGAATATCCT GCGCTACGAT ACCGAGGCTG GAACCGGCTG GTACAATGCG CCAAAGGGTT TTCTGGAAAA GGCGTGGAGC GGCCCCGGCA GTACCAACGA ATACTACAAA ATCTCCCAGA ATGCGGGTTT GAATACCAAT GTTTCCAAGT ATTTCGTGGA GGATGGCTCC TACCTGCGCA TGAAAAACGT GCAGATCGGG TACAGCCTGC CGGGAGGTTT ACTGCAAAAG GCGAAAATAA AGCAGGTGAG GTTTTATGTA GGTGCGCAAA ACCTCTTTAC CGTAACCAAA TACAGTGGTC TGGACCCGGA AATGGGCTCG ACGGACCCCA AGCTGACGGG CATCGACCAG GGATTTTTCC CGCAGGCCCG TACATGGATG TTTGGTATCA ATGCAAAATT CTAA
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Protein sequence | MKRLITTLHL IAICLCAVPR AEAQPVALSR LEPGGRPDVR PRQAVSLETK LRALEKQFQV SFLYNSEYVN GKTVKEMGKA GSLENSLRKI LEPNNLAFKK LRDNFYVIYI KDEAGEKEGD RPATEPGTLL KQQPTGQLPA TQPVNTLASL FKGPAMRKAA DMALTVSGVV ADAVTGEPLP GASVIVKGTG IGTTTNGDGR YELPNVPENA TLVFSFIGYL SSESAVENRS VIDMKLSADS KSLSEVVVVG YGTVSKKDVT GSVASIGGDE IRNMPVRSAA DALQGKAAGV MVTQASGSPG SAGVVRIRGI GSINNSNEPL YIVDGLPQTS IGWLNPNDIE TMDIHKDASA AAIYGSRASN GLVIITTKKG AKSESVSVSF DSYYGLQSPW KRPHMLNAQE FITYKNRAAE AVGVTPPISP DMQTQALNFV RTNTGPEGTD WWKQIMHQNA PVQSYNITVS GGSKKVDFAS ALGYMDQKGI VRGSDYRRIS WRNNVNAEIN DRVRLGSNIA VVYESRRNID ENNPYSGTIF SAMTADPITP VYRDNLKDIP PFYQTIMQGY DASNPFSRYA GILYSNKPNP VGQIERMRQS IWEGISMKGG ANLEVKIFEP LKFRSNFGLD VHRGLSKGFT PQYYLNGYDY ATYNTVSNYS YWSNYFVWEN TLAFDQAWGQ HRLNVLAGTS AELTKGLEYG ASKQGVVNNE EDMRIINAAT INPGASGYTY SNALNSYFGR VSYSFGGKYV LTANVRRDGT SRFAKDYRWG TFPSVSAAWN FTNEGFFKDA GLKWLSEGKL RASYGQIGNQ NVANGAYLST YANNNRYLFG DNKTWYMGAG RNSIGNPILQ WETSNQTDIG LDLAFLNHKL TLTADYFKKA VDNMLLIVPL PTTLGYPNFP WSNAGKMVNK GWDFAIGYDD EVAGFQYGIK ATLSTFTNKV TTLGGGEPIY STAHLGETIT KTEEGMPVGY YFGWLTDGIF QTQDEVDASA QKGLSTPGDI RFQNINGDQL LNADDRTKIG NPWPDFIYGL TVNAAYKGFD ISAFVQGSQG NDVMNILRYD TEAGTGWYNA PKGFLEKAWS GPGSTNEYYK ISQNAGLNTN VSKYFVEDGS YLRMKNVQIG YSLPGGLLQK AKIKQVRFYV GAQNLFTVTK YSGLDPEMGS TDPKLTGIDQ GFFPQARTWM FGINAKF
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