| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5309 |
|---|
| Symbol | |
|---|
| ID | 8228920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 6408224 |
|---|
| End bp | 6408763 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644933154 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003089667 |
|---|
| Protein GI | 255039046 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.304341 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.371287 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTCC ATACCACTGA TAATGCTCCT TTCCGGATAG ACGAACAGTC TTTTAAGCAG
ATCTACCTGG CTTACTGGGA GAAAGTTTAC GCGGTATGCT ACAACACCAT CCGCGACCCG
GAGCCTGCCA AGGGTATGGT GCAGGAAATA TTCAAATCGC TGTGGGAACG AAAGGACGAG
TTGGAAATCA CTACTTCCGT GGAGCGTTAC CTGCTGCGCT CGGCCAAGTT CAAGGTATTC
GAATACCTTA GAAACACGAA GTCGCGCAAA GAGCATAACG AGATCGCTTT TGCCGACCAC
TGCGACCGGA CGCATTGCAC GGAACACGAA ATCCTTTATA ACAGCCTCAA AAACAAGGTT
GATGGCCTGG TAGACACGTT ACCTTGCCAA TGCCGGCGCG TGTACAAAAT GAGCCGCGAG
GAAGGCCTGA GCAACAAAGA GATTGCTTCG GCACTGCTCA TCTCGGAGCG GGCCGTCGAG
TACCACATTA CCCGCGCGCT CACCACGCTC CGCGCCAATC TCGCCGAATA TATGCACTAG
|
|---|
| Protein sequence | MTVHTTDNAP FRIDEQSFKQ IYLAYWEKVY AVCYNTIRDP EPAKGMVQEI FKSLWERKDE
LEITTSVERY LLRSAKFKVF EYLRNTKSRK EHNEIAFADH CDRTHCTEHE ILYNSLKNKV
DGLVDTLPCQ CRRVYKMSRE EGLSNKEIAS ALLISERAVE YHITRALTTL RANLAEYMH
|
|---|
| |