| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5302 |
|---|
| Symbol | |
|---|
| ID | 8228913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 6398929 |
|---|
| End bp | 6400152 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644933147 |
|---|
| Product | signal transduction histidine kinase, LytS |
|---|
| Protein accession | YP_003089660 |
|---|
| Protein GI | 255039039 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3275] Putative regulator of cell autolysis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.107324 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTCA ATCCTATTTC ATCTGAAAAA AGGACAAAAA TAATCAGGGT ATTTTACCAT
CTAATAGCTT GGGTAGCGCT GTGGTGCATC GCGCGTTATT ACAGCATCCC GGCGCTCACG
AAAGATAATA TCCAGGTGAT CCGCCTTGCT TCGCTCGCCG TATTTCTGCA ATCCGTTTCG
GTGTTTTACA TGTTGGGATA TATCGTTTTC CCGAAGTTTC TGTACACGCG GAAAATCATC
TCGCTTATCG CTTGTCTCAT TATCATCTTC CTGCTTGTTC ACACCACCAA TTACTATCTT
TTTAAACACC TCGCCACGAT TTCGAACGGC TCGGAAGCAG CACCGCTTTA TATCATCAAA
CTTTGGAAGT ACTACCAGGA CGGCAATCAT TGGACAAATT GCTTTACAAA TTTTACAATT
GCCTATGCGG ATTATGCGTG GAGCCTGTAT TATATCACAC CATTGCTGGC CATCAAGGTA
ATGCGTGACA TTATTAATTC ACGGACCAGA AACATGCAGC TGGAAATGGA GCGTTTGCAG
CTGGAAAAAG AAAACCTGAA CCTGCAAACG CAAAGTTTGC AATTACAAAA GAATAACCTC
AATCTCGAAC TCAGCTTTCT TAAATCGCAG ATCAATCCGC ATTTCCTTTT TAATACACTC
AATGCAATTT ATACCAAAAC GATGGACGTG GATGAACAAG CCGCCGACCT GGTTTTAAAA
CTGGCCGACC TGATGCGTTA CAGCCTGTAT GAATCGAACC GGGAAAGTGT CGTACTTGCG
CGTGAAATCA GTTACATTGA AAATTACCTC GATCTCGAAC GCGCCCGATT CTCGGACAAG
GTCACGATCA GCTACGAGCT TATGGGCAAT CCGGAGGAGT ACCTCATCGC CCCGCTGCTG
CTCGTCTCGT TTGTTGAAAA CGCGTTCAAA CACGGCAGTG CTAAAAGCAA GCACGCGTCA
TACGTTTCTA TCACCATCCA TTTGATTAAC AATCATTTAC ATTTCTCAAT CAAGAATAAC
ATCCCTCCAA ATTCAAGGCC GACCAAGGTG GCGAATGCCG GAGAAAAGGT CGGCGGATAC
GGTTTAAGCA ATACATCGAA ACGGCTGCGG CTGCTTTATC CCGACAAACA TAAGTTATCC
GTACAACGGT CTGAAACCGA GTTCAGTGTC GACCTGGAAG TGGAGTTGGA CGCGGCTAAT
ATCGTTCAGC ATTTTCACTC ATAG
|
|---|
| Protein sequence | MRFNPISSEK RTKIIRVFYH LIAWVALWCI ARYYSIPALT KDNIQVIRLA SLAVFLQSVS
VFYMLGYIVF PKFLYTRKII SLIACLIIIF LLVHTTNYYL FKHLATISNG SEAAPLYIIK
LWKYYQDGNH WTNCFTNFTI AYADYAWSLY YITPLLAIKV MRDIINSRTR NMQLEMERLQ
LEKENLNLQT QSLQLQKNNL NLELSFLKSQ INPHFLFNTL NAIYTKTMDV DEQAADLVLK
LADLMRYSLY ESNRESVVLA REISYIENYL DLERARFSDK VTISYELMGN PEEYLIAPLL
LVSFVENAFK HGSAKSKHAS YVSITIHLIN NHLHFSIKNN IPPNSRPTKV ANAGEKVGGY
GLSNTSKRLR LLYPDKHKLS VQRSETEFSV DLEVELDAAN IVQHFHS
|
|---|
| |