| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5271 |
|---|
| Symbol | |
|---|
| ID | 8228882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 6364465 |
|---|
| End bp | 6365268 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644933117 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003089630 |
|---|
| Protein GI | 255039009 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGGAA ATACTGATTT ATCATTACAA AACACGCCGG GCCGCCCTGC GAGGATTGCG
CCCGACTACC TGCCATTGCT GAATAAATAT TACGACTTCG ACGGCTTCGA ACCCGAGCGC
CTGGACAAGC AACTGGCGCT TATCCGGGCT ATGGCGCAGC TCAGCAGCAG CGGCGTGACG
GTTTATGATC TCCAAAAACA AACGCACGTG TACGTCTCCC GGAATTTCTA TGAACTCTAC
GGTTATGAAT TCGCAGAAAC GGAATCGAGC ATTCCCAATG AATTGTTTGA CCGAAAAATA
CACCCCGACG ACCGCGAAAC GCTGGCGCGC AATGGCTACG ATGCGATGAA GTTCCTTATG
GGGCAGCCGG TGCACCTGCG GAAGCATTTT AAAATGGTAA CTGAATACCG GCTCGTGCTG
AACGACCAGG TATTGCGGGT AACTGAACAA CACCAGGTGC TTGAACTGGA TGCGTCGGGA
AACATATGGC TATCGCTGGG CGTGATCGAC GTTTCGCCGA ACCAGTCCCA GACCGATGTC
CGCAGCCAGG TCATCAACTT CCGCACGGGC GAGCTCATCC AGCCAGTGGC CAGCCGCATT
GATCCCGGGA TCAAACTGAC GTCGCGGGAG AAGGAAATAC TCGGGATGAT CGGCAAGGGC
AAATTGAGTA AAGAAATTTC CGCATTGCTG GACATCAGTG TCCATACTGT CAACACTCAC
AGGCAGCGCA TTCTTGAAAA GCTGCATGCC GACAATTCCA TCGAGGCATT ACAGAGTGCA
AAAATGATCG GGCTGCTGGC TTAG
|
|---|
| Protein sequence | MRGNTDLSLQ NTPGRPARIA PDYLPLLNKY YDFDGFEPER LDKQLALIRA MAQLSSSGVT
VYDLQKQTHV YVSRNFYELY GYEFAETESS IPNELFDRKI HPDDRETLAR NGYDAMKFLM
GQPVHLRKHF KMVTEYRLVL NDQVLRVTEQ HQVLELDASG NIWLSLGVID VSPNQSQTDV
RSQVINFRTG ELIQPVASRI DPGIKLTSRE KEILGMIGKG KLSKEISALL DISVHTVNTH
RQRILEKLHA DNSIEALQSA KMIGLLA
|
|---|
| |