| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5260 |
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| Symbol | |
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| ID | 8228871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 6344532 |
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| End bp | 6347714 |
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| Gene Length | 3183 bp |
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| Protein Length | 1060 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644933106 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003089619 |
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| Protein GI | 255038998 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAAG AAAAGCTTTA CCAGTTAAGA ATCGCCGTTT TTCTCCTGAT CGCCCTGTGT
TTGGGCCAGA CCGCGCGGGT GGAGGCGCAG ACTTCGAAAG AGATTAAAGG GGTGGTGCTC
GATAGCCTGA GCCAGACGGC CCTGCCGGGC GTGAGTGTGG TTCTCAAAGG CACTACCAGC
GTGGGCACTA CCACCGACGC CAACGGCGCA TACTCACTGG CGCTCCCTAC CGACGCTAGT
GCATTGGTTT TCAGCTTCGT AGGATATGCC AGCCAGGAAA TTACGATCGG AAACAGCTCG
AATATCAACG TAAATCTGCG GCCGGACAGC CAAGCCTTGA ACGAGATCGT CGTGACGGGC
TACTCATCCC AGCGGAAGCA GGATATTACC GGCTCAGTGT CGGTGGTGGA CATGAAAGCC
CTGAAATCGG TGCCGGCAGG GTCGGCGGTG CAGGCTTTGC AAGGGCAGGC GGCGGGTGTG
AATGTGATTA GCTCGGGCGT TCCGGGCGCG AGCAGCAACA TTTTCATCCG GGGCGTTACC
TCGTTCGGAA ATACACAACC GCTTGTCATT GTGGACGGTA TACAGGCCGA CCTCAACAAT
ATCAGTGCCG ATGATATCGA ATCCGTGCAG GTATTGAAAG ACGCGGGCGC CGCGGCTATT
TACGGCGTGC GGGGTGCCAA TGGGGTGATT GTGGTGACTA CGAAAAAGGG GAAATCCGGT
CAACCGACCG TGACTTACGA CGGTTACGTG GGTGTACAGC GGCCACTTCA GGGCAATCCG
TTCGACCTGC TCAATTCGGA GGATTATATG AAAGTGGTCA ACATTGCCAA TCCCAACAAT
TCGCTTTTCC GAAACGGAAT GCCCGATTAT CTCTATGCTG GCCCGGGCGT GGCAGGCGTG
GCGAAGGAAG GCGATCCGGC CGTAGATCCT TCCAAATATT TCCTCGACCC TATTAACACT
TCCAAAAATT ACCTGATCCA GAAGGTCAAC AAGCAGGGAA CCGATTGGTT TCACGAGCTA
TTCAAACCAG CGATAATGAC CAACCATAAC CTGGCTGTGA GCGGTGGAAA TGAGAAGGCC
AGCTACCTTT TTTCCCTCGG TTACATTCAC CAGAAAGGCA CATTGATCGA AACTTACCTG
AAAAGGTATT CCGCGCGGAT CAATACAGAA TACCGGATCA GCAAACGCAT TAAAGTGGGT
GAAAATGTCA ATATTTTCCA TGTCGACAAC CCCGGATTCG GGAATCAGTC GGAATTCGGG
ACGCTCTCGG CGGTGTACAA AATGATGCCG ATCGTACCGG TATACGATAT CCGGGGCAAT
TTCGGGGGCA CATTTGCGGG CCCGGACCTG GGCAGCAACC AGAACCCCGT GGCGCAGCAA
AAGCGCACGC TCAACAACCG TAACAGCTCC TGGAATATCG TCGGTAATGC CTATGCGGAA
GTCGAAATCC TCAAAAACCT GACGGCACGC ACCAGTTTCG GGGTCAATAT CAACAATCCT
TACAGCCAGA GCTTTAACTA CACCCAATAC GACAACAAGC AGGGCAACAG CAGCCCGAAC
AGCTACTCCG AAAGCGCCAG CTATAACAAC ATGATCACCT GGACCAACAC GCTGGGTTAC
AACAGGCAGT TTGGCAAGCA TAGCTTGCAG GTTTTGCTGG GCTCAGAGTC GATCAAAAGT
ATGGGAAGAA GTGTCGGCGG GGCGTCGCAG CGCTTTTTCT CCACTGAATT CGACTACCTC
ATCCTCGGCA ACGGAACTTC CGGGGTGACC AATTTCAGCA ATGCGTACGT CAACAGCCTG
TTTTCCATTT TCAGCCGCGT CGATTACGCG TTCCAGGACA AATACCTGAT CGGCGCCACG
ATCAGACGGG ACGGCTCTTC GCGGTTTGGC TCGCGGAGCC GATATGGCAC ATTCCCGTCG
GTTTCGCTCG GCTGGCGGCT GTCGGGCGAG GAATTCATGA AGTCGGTCAA CTGGCTCAAC
GACCTGAAAC TGAGGGCCAG CTACGGTGTG CTCGGCTCGC AAAACAATGT GGCCCCGGAA
AATGCCTACA CCCTCTTCGG CGGAGGCTAC GGCAATGCAT ATTACGACAT TACCGGTTCC
AGCAACAGTG TTAAGCAAGG TTTTATTCAA ACGAGAATCG GGAACCCGAA TGCCAGCTGG
GAAGAGAATG TGGTGACCAA CATCGGGCTC GACGCTACGA TTCTGAACAA TAGCCTGGAT
TTTTCATTCG AATACTACAA AAAATCGATC AACGGCCTGC TCTTCACGCA GCCGCTGCCC
GCCACGGTGG GAGGCGCTGC CGCACCGGTG GTAAACATCG GCGACATTCA GAACAAGGGC
TTCGACGTGG CCCTCACCTA CCGCGGCCGC GTCGGCAACG GGCTGCAGTA CTCGATCGGG
ACCAACATTA CGGCCTACAA AAACCTCGTG GTGGACATTC CGAGTCCGGG CTATTTCGAC
GGCGTGAGCC AGCAGGGAAT GGGCACACTC GTCCGCAACA AGCAGGGCGA AGAAGTGAGC
TCTTTCTTTG GTTACGAGGT GATTAAACTA TTCAATTCGG ACCAGGAGGT GGCCGAAGCA
CCAGCACAAA CCGGCGCCGC TCCGGGACGG TTCCGTTACC GCGATGTGAA CGGCGACGGC
GTGATCACCC CCGAAGACCG CACCATGCTG GGCAGCCCCA ACCCGGATTT CACCTACGGC
CTCAACCTGG GCCTGAATTT CAAGGGCTTC GACTTCTCCG CCATTTTCTA CGGTTCGCAG
GGGGCCGAGA TCGTCAACAC CATTCGTTCC TACACTCACT TTTATGCGGG ATACATCGGC
AACAAAAGCA ATGCGCTGCT GAATGCCTGG ACGCCCGAAA ACACCAACAC GACCGTACCC
AAAATTGAAA CCGGCGCCAC GTTAAGTACC TCGGGTGCAT TGAATTCCTA CTTCATCGAA
GACGGCTCGT ACCTCCGGCT CCGGTCGCTG ATATTGGGCT ATACGATCAA GCCGGGGATA
TTGCAGAAGA TCAAGGTGTC CAAACTCAGG CTCTACGCAC AGGCGGCCAA CCTGTTTACC
ATTACCAAAT ATTCGGGCCT CGATCCCGAG CTGGGCGGCA GCAGTTCGAG CTTTGGGGTG
GATTACGGCA ACTACCCGAA CAACCAGCAG AATTTCCTGT TCGGCGTCAA CCTTTCTTTT
TGA
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| Protein sequence | MKQEKLYQLR IAVFLLIALC LGQTARVEAQ TSKEIKGVVL DSLSQTALPG VSVVLKGTTS
VGTTTDANGA YSLALPTDAS ALVFSFVGYA SQEITIGNSS NINVNLRPDS QALNEIVVTG
YSSQRKQDIT GSVSVVDMKA LKSVPAGSAV QALQGQAAGV NVISSGVPGA SSNIFIRGVT
SFGNTQPLVI VDGIQADLNN ISADDIESVQ VLKDAGAAAI YGVRGANGVI VVTTKKGKSG
QPTVTYDGYV GVQRPLQGNP FDLLNSEDYM KVVNIANPNN SLFRNGMPDY LYAGPGVAGV
AKEGDPAVDP SKYFLDPINT SKNYLIQKVN KQGTDWFHEL FKPAIMTNHN LAVSGGNEKA
SYLFSLGYIH QKGTLIETYL KRYSARINTE YRISKRIKVG ENVNIFHVDN PGFGNQSEFG
TLSAVYKMMP IVPVYDIRGN FGGTFAGPDL GSNQNPVAQQ KRTLNNRNSS WNIVGNAYAE
VEILKNLTAR TSFGVNINNP YSQSFNYTQY DNKQGNSSPN SYSESASYNN MITWTNTLGY
NRQFGKHSLQ VLLGSESIKS MGRSVGGASQ RFFSTEFDYL ILGNGTSGVT NFSNAYVNSL
FSIFSRVDYA FQDKYLIGAT IRRDGSSRFG SRSRYGTFPS VSLGWRLSGE EFMKSVNWLN
DLKLRASYGV LGSQNNVAPE NAYTLFGGGY GNAYYDITGS SNSVKQGFIQ TRIGNPNASW
EENVVTNIGL DATILNNSLD FSFEYYKKSI NGLLFTQPLP ATVGGAAAPV VNIGDIQNKG
FDVALTYRGR VGNGLQYSIG TNITAYKNLV VDIPSPGYFD GVSQQGMGTL VRNKQGEEVS
SFFGYEVIKL FNSDQEVAEA PAQTGAAPGR FRYRDVNGDG VITPEDRTML GSPNPDFTYG
LNLGLNFKGF DFSAIFYGSQ GAEIVNTIRS YTHFYAGYIG NKSNALLNAW TPENTNTTVP
KIETGATLST SGALNSYFIE DGSYLRLRSL ILGYTIKPGI LQKIKVSKLR LYAQAANLFT
ITKYSGLDPE LGGSSSSFGV DYGNYPNNQQ NFLFGVNLSF
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