| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5259 |
|---|
| Symbol | |
|---|
| ID | 8228870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 6342726 |
|---|
| End bp | 6344504 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644933105 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003089618 |
|---|
| Protein GI | 255038997 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAT ATTCTAACCC ATTCCGTAAA ATCCTGCTGC TTTCGCTCGT CATGCTATCG
GCCTGCAACA AGGATTACCT TGAACTGAAC CCGATTGGGT CGGTCAATGA ATCGATATTG
GCTACCAAAT CGGGCGTGGA CGGGGTGTTG ATCGGCGCTT ACTCCCTGCT CGACGGCGCC
GGGGCCGTGG GCGGCGGGAT CTGGGGCAGC CTCACCGTGA TGGCCAGCAT TGCTTCCGAC
GACGCGCATA CCGGCACCGA GCCCAATGGC CTGCTCGCAT CTTACGAGGG TTACAGCCAC
GATCCCACGA CCTCCTCCAC AGATGAAAAG TGGCGGTTCC TGTACGCGGC CGTCCAGCGG
TCGAATGATG TATTACGTAT ATTGCCTAAG GTTAAGGATA TTTCCGAAGC CGACGCATTG
CAAATTAAGG CCGAAGCCAC GTTCCTGCGC GGGGTGTACC ACCTCGAACT CGCCAAGCTA
TGGCGCAATG TGCCATTTGT GGACGAAACC ATCACCTACG ATGCCAGTAA CTACAATGTG
ACCAATACCG ACCCGATATG GCCGAAAATC GAGGCCGACC TGCAATTCGC CGCAACAAAT
CTGACGCCCA CCAAATCGGA CGTGGGGCGC GCCAACAGCT GGGCAGCCAA ATCGTTTCTG
GCAAAAGTGT ATATGTTTCA AAATAAATTC AATGAAGCTA AAACGCTGCT GGACGACATT
ATCGCGAATG GCGTGACGGT GAATGGCAAA AAGTACGCAT TGGCGGAAGC TTATTTCGAC
AACTTCCTGA CCGCCAAAAA ACACGGGGCC GAGGTCGTAT TCGCAGTTCA GATGTCGGTA
TACGACGGTT CCAACGGCGC GAACGGCAAC GGGGCCGATT TGTACAACGG TCCTTTCGGC
GGTCCGCCTT CGTGCTGCTA CGGCTGGCTG CAACCCTCAT TCGACCTGGT GAATTCCTAC
CAAACCGACC CGGTCACAGG CCTCCCGCTG TTTGACACGT ATAATCAAAA CCCGGTCAAA
AACGACCAGG GCCTCGAATC GTCGGAGCCA TTCACGCCGC ATACCGGCAC GCTGGATTCG
CGCCTCGACT GGAATGTGGG CCGGCGCGGC ATCCCCTACC TCGACTGGGG ACTGCATCCC
GGAAAGGCGT GGATTCGCCA GCAGCTAACC GGCGGGCCTT ACAGTGTGAT CAAAAACATC
ACCACGCAGG AGCGCGTATC GCTCGACCGC GAGAATGCCG CCATGAACTC GCCCTATAAT
ATGATCCGCT TCGCCGACGT GCTGCTTTGG GCGGCCGAGG CGGAGGTGGA AGTGGGTAAC
CTGGCCAAAG CGGAGGAATA TGTGAACCGC GTGCGCGCCC GGGCGGCGAA TCCGGCGGGT
TGGGTTAAAA AGTATATCGA TGACAAAGCG CCGCTAAAAG GCTTTACCGA CATTCCAGCC
GCTAATTACA AAGTCGGGTT ATACAAAGGG CATTTCACGC AGCAGGGAAA AGAATACGCC
AGAAAAGCCG TACGCTTTGA GCGGAGACTG GAACTTGCGC TAGAACACCA CCGGTTTTTC
GACCTGCAAC GCTACGACAA TGGCACCGGC TTTATGGCCA CGACGCTCAA CACTTACCTG
AACTTCGAAA CCAACGTGCC CAAGTACGAC AACAAGGCCT ACATGCCCAA CACTAACTTC
ACCAAAGGAA AGAATGAGGT GTACCCGATC CCGCAAGCGC AGATCGACCT GAGTATGAAA
GACGGTACGC CAACCTTAAA ACAGAATCCA GGTTATTAG
|
|---|
| Protein sequence | MKRYSNPFRK ILLLSLVMLS ACNKDYLELN PIGSVNESIL ATKSGVDGVL IGAYSLLDGA
GAVGGGIWGS LTVMASIASD DAHTGTEPNG LLASYEGYSH DPTTSSTDEK WRFLYAAVQR
SNDVLRILPK VKDISEADAL QIKAEATFLR GVYHLELAKL WRNVPFVDET ITYDASNYNV
TNTDPIWPKI EADLQFAATN LTPTKSDVGR ANSWAAKSFL AKVYMFQNKF NEAKTLLDDI
IANGVTVNGK KYALAEAYFD NFLTAKKHGA EVVFAVQMSV YDGSNGANGN GADLYNGPFG
GPPSCCYGWL QPSFDLVNSY QTDPVTGLPL FDTYNQNPVK NDQGLESSEP FTPHTGTLDS
RLDWNVGRRG IPYLDWGLHP GKAWIRQQLT GGPYSVIKNI TTQERVSLDR ENAAMNSPYN
MIRFADVLLW AAEAEVEVGN LAKAEEYVNR VRARAANPAG WVKKYIDDKA PLKGFTDIPA
ANYKVGLYKG HFTQQGKEYA RKAVRFERRL ELALEHHRFF DLQRYDNGTG FMATTLNTYL
NFETNVPKYD NKAYMPNTNF TKGKNEVYPI PQAQIDLSMK DGTPTLKQNP GY
|
|---|
| |