| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5225 |
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| Symbol | |
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| ID | 8228836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 6297253 |
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| End bp | 6300477 |
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| Gene Length | 3225 bp |
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| Protein Length | 1074 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644933075 |
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| Product | helicase domain protein |
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| Protein accession | YP_003089588 |
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| Protein GI | 255038967 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.786499 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAT TCAATAACAT AGATAGTCGG CTGGGAGACG ATCTGAAGCT TGAATTCAGA
AAGGGTAGTA AGCTAAGTGT AGCAGCGTCT GCTTTTTCAA TCTATGCGTT TGAAGCACTA
AGGAAAGAGC TGAAAAGCGT TGAAGAGCTT CGGTTTATTT TTACAACTCC CACTTTTCTG
GAGGAGAAGT CTAAACCAAA GCTGCGGGAA TTTTACATTC CGAACATCCG GAAAGAGTCT
GATTTGTGTG GTGGTGAGTT TGAGTTACGG TTAAAAAACG AGATGACTCA GAGAGCCATC
TCACGGGAGT GCGCCCAGTG GGTTAAGGAC AAAGCTGTGT TTAAAACAAA CACCCTTGGT
AATTCGCCTA TGAATAGCCT GATTCACGTT GATAATGGGC CTGAAGATAG TGCATCCTAT
TCAGGATTTG CTGGATTTAC ATCTCCCGAC CTGGGTTTTA CTTCCCGGAA AGGCCATCGC
TCAATGATAA CAAAAGTCAA CTACCCCATG GCCGAAGGCT ATTTGGAATG GTTTGACGAG
ATATGGAATA ACGATGAAAA TACGGATCTA GTAACGGAAA GCGTGCTCCG TTATCTGGCG
GGAGCTTATC AGGAGAACAG TCCGGAATTT GTCTATTTTG TAACGCTCTA CAATATTTTT
CGCGACTTCC TCAGTGACTT GTCGCTGGAC AATCTACCAA ATGACAGCAT CGGTTTTAAA
GAAACCGTCA TATGGAATAG GCTGTATAAT TTTCAGCAGG ATGCTGTCAT TGGTGGAATT
AACAAGCTGG AAAAGTACAA CGGCTGTATC ATCGCCGACA GTGTGGGCCT GGGGAAAACT
TTTACAGCTC TGGGGATTAT CAAATACTAC GAGAAGCGAA ATAAAGATGT TCTGGTATTA
TGCCCTAAAA AGCTTGAGGC CAACTGGAAC ACCTACCGCC ACAACGATAA AAACAATATC
TTGGGTAAAG ATCGCTTCCG ATACGACGTT TTGTTTCACA CAGATTTATC GCGAGACAAA
GGAACTAGCA ATGGTAGGAA TCTTGAAAGT GTTAACTGGG GGAACTATGG CCTGGTAGTC
ATTGATGAAT CACACAATTT TCGTAACAAC AACACAGTCG TAGGGAAAGA AAACCGCTAT
CAAAAATTGC TTCGGAAGAT TGTTCAGGAG GGTATTGAAA CGAAAGTATT GATGCTTTCG
GCCACTCCTG TCAACAACCG CTTTAACGAT CTGCGTAATC AGCTTGCCCT GGCCTATGAG
GGTGCAGCAG GGCAAATTGA TGAGAAACTG GATACAGACC TTGGAATCGA ACTGGTCTTC
CGGCGGGCAC AGCAGGCTTT CAACAGTTGG TCTAAACTAC CTACCGAAGA AAGAACCTCA
GACCGGCTGT TGGAAGCGCT AGATTTTGAT TTTTTCCAAA TATTGGACAG TTTGACGATT
GCTCGGTCCC GAAAACATAT AACCAATTAT TACGACACAG CAGCAATCGG AAAATTTCCT
CAACGGAATA AACCAATCTC GATTTACAGC CCACTAAAAG AAGGAACGGA GTTAAATTAC
AAACATATCG CCGATTGGTT AGAGTTTCTG AATCTTTCTA TTTACTCACC TTTAAATTAT
ATTCTGCCAA GCAAAATTCC GTTTTACGCG GAGAAATATG ATAAGCGCGT AAAGTCGGGA
ACCTTCAAGC AAAGGGACCG TGAAAAGAGC TTGCAACTCT TGATGCGCAT CAATCTTTTA
AAGCGAATAG AAAGTTCCGT CGATTCTTTT GCTCTGACTC TCCTGAATAT TCGTGCGCTA
ATTGAAGAAG GTTTAGGCGC AATTGCGCGG GGGGATGCTA ACACGTATTC AGGCCTTCCG
GCAGACCCTA CATCTGAAGA GTTCGATTGG GAGCCGGATT GGGGAGAAGA GGAAAATGTT
TTCGGGAGCA AGGTGAAAGT TCATATCGCT GATATGGATA AAGTAAGATG GCAGGAAGAC
CTCTCTGCTG ATCTCTTGGT AATCAATGAA CTCCTGAAAG AAATCGAATT ACTGAGAGGG
AAATGTGATC TGAAGCTAGG CAAGCTTAGA AAGATTATTG TGGATAAGAT CCAAAATCCG
GCTAATGCCG GGAACAAAAA AGTGATCGTA TTTACCGCTT TTGCAGACAC AGCAAATTAT
ATTTATTCAG AGCTGAAAGA TTATTTTAGG AATGAGTATG GCCTGAATAC CGCTCTAATC
ACGGGATCAA AACGTGCTTG TTCATCGAAG ACTGTTCCGT CTGATCTGAA TACGCTATTG
ACTTGCTTTT CCCCACGCTC AAAAGGGAAG GCAATCATTT ATCCCGATAT TCAGGAAGAA
ATCGATATTC TGATTGCAAC AGATTGCATT TCGGAAGGCC AGAACTTACA GGATTGTGAT
TACCTGATTA ATTACGATAT TCATTGGAAC CCCGTTCGTA TCATTCAGCG GTTTGGTCGT
ATTGATAGGA TTGGCTCAGC GAACGACACC ATCACCATGG TTAATTTCTG GCCGGACGTT
ACACTGGACG CCTATATTAA TCTCAAGCAG CGCGTTGAGA ATAAAATGGC CATCAGTAAC
CTCGCCAGCA CAGGCGATGA CAATATACTC AATGCCGATG AGAAAGATCT GGAATACAGA
AAAATCCAAC TGAAAAGGCT GCAAGAAGAA GTTGTTGACC TGGAAGATCT TCGTGAAGGG
GTCAGTATAA CTGATCTTGG ATTAAATGAT TTTAGGGTGG ATCTGGCTAA TTTCGTTAAA
ATATATCCCA ATCCCGACTC TATTCCCTTG GGATTGCATG CGGTTACGCC AGCAAGTGAT
GTCGATCAAC GCGGGGTGAT TTTTGTTTTA AAGAACATAA GTGATTCTGT AGACAAGGAT
AAACTGAACC GATTAGCCCC GTATTACGTG GTGTACATTC AGGAAAATGA GAATGTATTA
CATGGCTATT TAGAAGCGAA GAAATCATTG GATATGCTAC GGCTACTTTG CAAGGGCAAA
ACTGAACCGT TGAAGGAACT TTGCAAGCAG CTTAATCTGG AAACACGGGA TTTCCGCGAT
ATGCACGACT ATTCCCAGTT ATTGCAGAAA AGTATCCGTT CCATTCTGAA AACTGGAGAT
GAGAAAGAGG TACTTAGCCT ATTTAAAGCA GGTGGAACTG CAACAATAGG AATGCCCAAG
GGAATTGAAG ATTTTACCCT TGTAAGTTTT GTTATCGTGA AATGA
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| Protein sequence | MKIFNNIDSR LGDDLKLEFR KGSKLSVAAS AFSIYAFEAL RKELKSVEEL RFIFTTPTFL
EEKSKPKLRE FYIPNIRKES DLCGGEFELR LKNEMTQRAI SRECAQWVKD KAVFKTNTLG
NSPMNSLIHV DNGPEDSASY SGFAGFTSPD LGFTSRKGHR SMITKVNYPM AEGYLEWFDE
IWNNDENTDL VTESVLRYLA GAYQENSPEF VYFVTLYNIF RDFLSDLSLD NLPNDSIGFK
ETVIWNRLYN FQQDAVIGGI NKLEKYNGCI IADSVGLGKT FTALGIIKYY EKRNKDVLVL
CPKKLEANWN TYRHNDKNNI LGKDRFRYDV LFHTDLSRDK GTSNGRNLES VNWGNYGLVV
IDESHNFRNN NTVVGKENRY QKLLRKIVQE GIETKVLMLS ATPVNNRFND LRNQLALAYE
GAAGQIDEKL DTDLGIELVF RRAQQAFNSW SKLPTEERTS DRLLEALDFD FFQILDSLTI
ARSRKHITNY YDTAAIGKFP QRNKPISIYS PLKEGTELNY KHIADWLEFL NLSIYSPLNY
ILPSKIPFYA EKYDKRVKSG TFKQRDREKS LQLLMRINLL KRIESSVDSF ALTLLNIRAL
IEEGLGAIAR GDANTYSGLP ADPTSEEFDW EPDWGEEENV FGSKVKVHIA DMDKVRWQED
LSADLLVINE LLKEIELLRG KCDLKLGKLR KIIVDKIQNP ANAGNKKVIV FTAFADTANY
IYSELKDYFR NEYGLNTALI TGSKRACSSK TVPSDLNTLL TCFSPRSKGK AIIYPDIQEE
IDILIATDCI SEGQNLQDCD YLINYDIHWN PVRIIQRFGR IDRIGSANDT ITMVNFWPDV
TLDAYINLKQ RVENKMAISN LASTGDDNIL NADEKDLEYR KIQLKRLQEE VVDLEDLREG
VSITDLGLND FRVDLANFVK IYPNPDSIPL GLHAVTPASD VDQRGVIFVL KNISDSVDKD
KLNRLAPYYV VYIQENENVL HGYLEAKKSL DMLRLLCKGK TEPLKELCKQ LNLETRDFRD
MHDYSQLLQK SIRSILKTGD EKEVLSLFKA GGTATIGMPK GIEDFTLVSF VIVK
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