Gene Dfer_5114 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5114 
Symbol 
ID8228721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6178591 
End bp6179304 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content47% 
IMG OID644932962 
ProductNUDIX hydrolase 
Protein accessionYP_003089479 
Protein GI255038858 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1051] ADP-ribose pyrophosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.32433 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGATTAG ATATTTTAAA GCAATACCAG GCCCAGACGA AATGTCTGGT TGCGCTGGAT 
TCTATCATTT TTGGTTTTGA TGGCGAAGAG CTCAAATTGT TGTTGGTAAA AAGGGGCATT
GAAGACGAGC ATCACACATG GTCGCTTATG GGCGGCTGGG TACAACCCGA CGAAAGCCTC
GAAGGCGCAT CGTCCCGCAT CCTGTTTGAA TTGACCAATC TCACCGACAT TTACCTCGAA
CAACTTTACA CATTCGGAAG TCCCCAGCGC GATCCCGTTG AGCGAACGGT GTCAGTCGCC
TATTTCGCAC TCATTAATGT GGAGGATTAC GACCATAAGA TTTCCAAAAA CTTCGAAGCG
CAGTGGTTTT CGATGCAGGA ATTGCCTAAG CTGCTCTTTG ACCACGGCAT GATGGTCGAA
ATGGCTATTC AGCACCTGCG TTACAAGGCC TCGCAGCACC CGATCGGCTT CGAATTGCTG
CCTGAAAAGT TCACGATTCC CCAGTTGCAG AAATTGTACG AAGCGATTTT CGGAACGGAG
CTGGATAAGC GCAATTTTAG CCGTAAACTC TTGTCAACCA ACTTGTTGAT AAAACTGGAC
GAGAAGCAGA AAGGCTATTC CAAAAAGGGC GCGTATTTCT ACAAAATCGA CGAGGAGAAA
TATAAAAAGC AGTTTAATAC CTTCCTGAAC TTCCTGCCGG GAAGCGCTTC TTAG
 
Protein sequence
MRLDILKQYQ AQTKCLVALD SIIFGFDGEE LKLLLVKRGI EDEHHTWSLM GGWVQPDESL 
EGASSRILFE LTNLTDIYLE QLYTFGSPQR DPVERTVSVA YFALINVEDY DHKISKNFEA
QWFSMQELPK LLFDHGMMVE MAIQHLRYKA SQHPIGFELL PEKFTIPQLQ KLYEAIFGTE
LDKRNFSRKL LSTNLLIKLD EKQKGYSKKG AYFYKIDEEK YKKQFNTFLN FLPGSAS