| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5055 |
|---|
| Symbol | |
|---|
| ID | 8228662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 6109834 |
|---|
| End bp | 6110886 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644932903 |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003089420 |
|---|
| Protein GI | 255038799 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAA TAAAAGGACC CGGTATCTTC CTCGCCCAAT TCCTTGGCGA TGAAGCTCCG
TTCAACTCAT TGGATACCAT CGCCGACTAC ATGGCAGGAT TGGGCTATAA AGGCCTCCAA
CTTCCTACCT GGGACCCGCG TGTGATTGAC GTGAAGCAGG CGGCTGAGTC GCAGACCTAT
GCGGATGAGC TGAAAGGTAA ATTGGCAGAC AAAGGTTTGC AAATCACAGA ATTGGCTTCG
CACATTATCG GTCAGCTGGT GGCTTCGCAC CCGGTTTATG ATGAAATGTA TGATAATTTT
GCCGTTCCCG AGGTTCGTAA CAACCCGAAA GCGCGTGCGG AATGGGCTAC GCAGCATTTG
AAACTCGTGG CGCAGGCAAG CCGCAGACTG GGCCTGAAAG CTTCTGCTAC CTTCTCCGGT
GCATTGGCGT GGCCTTTCCT TTATCCGTGG CCTCAGCGCC CTGCGGGTTT GGTGGAAACG
GCTTTCAAAG AACTGGCTGC CCGCTGGAAG CCGATTCTGG ACGTGTATGA CGAAAACGGT
GTAGACGTGG CGTATGAGCT GCACCCGGGC GAGGATCTGT TCGACGGTAC TACTTTCGAA
ATGTTTGTAG ACTACCTCGA CGGCCACACC CGCGCGAATA TCAACTACGA CCCGAGCCAT
TTCGTGTTGC AACAATTGGA TTACCTCCAA TTCATCGACC TCTATCACGA CCGCATCAAG
GCATTCCACG TGAAAGACGC GGAATTTAAC CCAAGCGGCA AGCAGGGCGT GTACAGCGGC
TTCGCAGGCT GGGCCGATCG CGCCGGACGT TTCCGTTCGC TGGGCGACGG CCAGGTGGAT
TTCGGTAGCA TTTTCTCCAA ACTTTCTCAG TACGATTACG ACAGCTGGGC GGTTCTGGAA
TGGGAATGCT GCATTAAGTC GCCCGTACAA GGTGCGGCGG AAGGTGCACC GTTCATCGAA
AGCCACATCA TCGAAGTGAC CACGAAAGCA TTCGATGACT TCGCGGGAAC CGGTGCAGAT
GAGGCATTTA ACCGCAAGGT TCTGGGTCTT TAA
|
|---|
| Protein sequence | MKTIKGPGIF LAQFLGDEAP FNSLDTIADY MAGLGYKGLQ LPTWDPRVID VKQAAESQTY
ADELKGKLAD KGLQITELAS HIIGQLVASH PVYDEMYDNF AVPEVRNNPK ARAEWATQHL
KLVAQASRRL GLKASATFSG ALAWPFLYPW PQRPAGLVET AFKELAARWK PILDVYDENG
VDVAYELHPG EDLFDGTTFE MFVDYLDGHT RANINYDPSH FVLQQLDYLQ FIDLYHDRIK
AFHVKDAEFN PSGKQGVYSG FAGWADRAGR FRSLGDGQVD FGSIFSKLSQ YDYDSWAVLE
WECCIKSPVQ GAAEGAPFIE SHIIEVTTKA FDDFAGTGAD EAFNRKVLGL
|
|---|
| |