Gene Dfer_5054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5054 
Symbol 
ID8228661 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp6106349 
End bp6109756 
Gene Length3408 bp 
Protein Length1135 aa 
Translation table11 
GC content51% 
IMG OID644932902 
ProductPKD domain containing protein 
Protein accessionYP_003089419 
Protein GI255038798 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2133] Glucose/sorbosone dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAT CCCCTTTTCA AAAAGTATTA AAGCATTTCA GGATTGCCGG TGTGGCTGCC 
CTGGCCTGTT GCAGTCTGGC GGCAACTGCC CAGACGGTGA CGCCGGAGAA GCGCGTGCTG
GTATTCTCGA AAACAGCCGG GTTCCGGCAT TCGTCTATCC CGGCAGGGAA AACTGCCATT
TTAAAGCTGG GGAAAGAGAC CGGTTTTTCG GTGGATACTA CCGAGAACTC GGCTGTTTTT
ACGAATAAAA ATCTGCAAAA ATACGCTGCG GTTGTATTCC TGAACACCAC CGGCAATGTG
CTGAACGACA AGCAGCAGGA TGCATTTGAG CGATACATCC AGGCGGGCGG CGGCTACGTG
GGCATCCACG CCGCAACCGA CACCGAATAC GAATGGCCGT GGTATAACAA ACTCGCCGGC
GCGCAATTCC TGAGCCATCC TGGCAACCCG AATGTGCAGG AAGGCGAGGC ATTTGTTGTG
AACGACCAGC ATCCTTCGAT GGATGGTTTT CCAAAAAAAT GGAAGATCAA GGATGAATTT
TACGACTTCA AAAACTTCAA TGAAAAAGTA AATGTCCTCG TGAAGATCGA TGAAAAGACT
TACAGGGACG GCAAAATGGG CGATAACCAC CCAATGTCGT GGTACCACGA ATTTGACGGT
GGTCGTGCAT TCTACACCAA CTTCGGGCAC GAAGATGCGA CTTTCATCAA CCCTGTTTTT
GTAAAACACC TGACCGGTGG ATTGAACTGG GCGATGGCTT CCAAGCTGGA TTATGCCAAA
TCACGGCCGG AAGAGAACCG TTTTACCAAA AAAGTACTGG TTACCAAACT GGATGAGCCT
ACTGAACTGG TAGTTCTGGA TGATCAGCGT GTACTTCTGA CTGAGCGCAA GGGAAAAGTA
AAGCTTTACA ATCCCAAAAC CGGAAAGGTG AAACTGGTGG CCGAAGTACC CGTTTATACC
AAGCAGGAAT ATGGCCTGAT GGGGCTGAAC ATCGACCCCA ACTTCAAGAC CAACAAGCTG
GTATATATGT ATTATTCTCC CCCATCGACC GCGGCCGACA CTGCTCAGCA TTTGTCGCGC
TTCAAATACG ATGATGTAAA GGATACATTG CTGCTCAGCA CCGAAGAGCT CATGCTCACC
GTGCCCGTGA AGCGCACGGA TTGCTGCCAT ACCGGCGGAT CAATTGCCTG GGATGCGAAA
GGTAATCTCT ACTTATCCAC CGGTGACGAC GTGAACCCGT TCCAATCAAA CGGTTATGGG
CCGATCGACG AGCGTCCGGG ACGTGAAGGC TGGGATGGAC AGCATACTTC ATCGAACACT
AATTCATTGA GAGGCAAAGT ATTGCGCATT AAACCGCGTT ACGGCGACCG TCGTGCGAAC
ATGCCGGGCG GTACTAACCT ATACGATATT CCAGAGGGCA ACCTCTTCCC TCCCGGAACG
GAAAAGACGC GTCCTGAAAT CTACGTGATG GGTACCCGCA ACCCTTACCG CATTTCGGTG
GACCAGCACA CGGGCTATTT GTATTGGGGT GATGTGGGCC CGGATGCGTC CAACGACGAT
CCGAAACGTG GTCCGAGAGG GTATGACGAG GTAAACCAGG CCCGGAAAGC GGGTTATTTC
GGTTACCCTT TGTTCATTGG TAACAACCGT CCGTACATTG ATTTCAACTT CGCCGACAGC
ACTTCCGGCA AGCCGTTTGA TCCATTGAAG CCGATCAACA ATTCGCCGCA CAACACCGGT
TTGCAAGAAT TGCCGCCTGC GCAGCCCGCA TTCATCTATT ATCCTTATGC CGATTCTCCC
GAGTTCGGCC CGATCGTAGG TAAAGGCGGA CGGAATGCAA TGGCCGGCCC GGTTTACTAT
TCCGCTGACT TTCAGGACAG CAAGGTGAAG TTTCCTTCGT ATTACAATGG CAAGTTCTTC
GCTTACGACT GGATTCGTGA TTACATCAAC ATCGTGACCA TGAACGAGCA AGGCGACCTG
CAAAGCATCG AGCGCTTCAT GCCGGGCACG AAGTTCAGCC ATCCGATCGA CATGCAGTTT
GCCAAAGACG GCTCATTATA TACATTGGAA TACGGCCCCA ACTGGTTTGC CCAAAACGAC
GAAGCGAGCC TTTCGCATAT TACATTCAAC GCAGGAAACC GCGTTCCGGT GGCAATCGCA
AGCGCAACCA ACACGACAGG CGCTACCCCA TTGAAAGTCA ATTTCTCTTC CAAAGGCTCC
ATGGATCACG ACGGCGACCC GATTAAATAC GAATGGTCGT TTGGAAAAGG CCTGCCAAAA
AGTACGGTTG CTAACCCAAG CTACACGTAC GCTAAGCCAG GCGAATACAC CGCCACTCTC
AAAGTGACCG ATAATGCCGG TAATTCCAAC ACCTCTGAAG TGATCGTACG CGTCGGTAAC
GCGATCCCGA AAGTGGATGT AGCGATCAAA GGCAACAAGA CATTCTACTG GAACGACATG
CCTGTAAACT ACGAAGTATC CGTGTCGGAC AAGGAAGACG GTAGCCTGGC GAACAAGAAA
ATTCCGGAAG ACGAAGTGAC TTTGACGATC AATTACCTTG AAGGATTTGA CAAAACGCAG
CTCGCGCAAG GCCATCAGGC CAATACAGGC TTCGAAACCG GCAAGCGGAT GATCGAGCTG
AGCGATTGCA AGGCATGCCA TTCGGTCGAC AAAAAGTCCA TCGGACCGGC TTATCGCGAA
GTAGCGAAGA AATACGCCAG CGAGCGCAAT TCACTGAAAA CGCTCACAGA CAAAATCCTG
AAAGGCGGAA GCGGCGTTTG GGGCGAGCAG GCAATGCCGG GTCACCCGCA GCACAAGCCG
GAAGAGATCG AAGAAATGGT GAAGTACATC CTCGACCTCA ACAATACAAA AGCCGTTGAC
AAAAAGCCGT TGAAAAGCTC ATACGTGACG CAGGCTAAAA AGAAAGACGG TTCGTACATC
TTCACGGCCA GCTACACCGA CAGGGGCAAC GGCACAATGG GTCCATTAAC CGGCTCGAAA
ACCGTTGCGC TCCGTCCATC CACATTAATG GCAAATATGG CGGATACCAC CAGAAACACC
TTCAAATACA AAGGCGATAA TGGCAACGAA ATGGTGATTG GTATGAAAGA TGGCGGCTTC
ATCGCCTTCG ACGACATCGA CCTCACCCAA ATCACGAAAC TGGCAGTTTC CGTGGGCAGT
AAAGCCGGGC AATCGGCCGG TGGAACGCTG GAAGTGCGCC TCGACGGGGC GGCCGGTGCG
AAAATCGGCG AAGGCAAGGT CGATAAGTCC GAAACAATCA GCATTCCTGT GAAAGCTCCT
GCGGACGGTA AGTTGCATAA AGTGTATTTT ATATTTAAAA ATGCATTAGC TGGCAGCAAA
CCGCTGTTTT CGATTGAATC GATTCAGTTT GAGAATGCCG TATTGTAA
 
Protein sequence
MSESPFQKVL KHFRIAGVAA LACCSLAATA QTVTPEKRVL VFSKTAGFRH SSIPAGKTAI 
LKLGKETGFS VDTTENSAVF TNKNLQKYAA VVFLNTTGNV LNDKQQDAFE RYIQAGGGYV
GIHAATDTEY EWPWYNKLAG AQFLSHPGNP NVQEGEAFVV NDQHPSMDGF PKKWKIKDEF
YDFKNFNEKV NVLVKIDEKT YRDGKMGDNH PMSWYHEFDG GRAFYTNFGH EDATFINPVF
VKHLTGGLNW AMASKLDYAK SRPEENRFTK KVLVTKLDEP TELVVLDDQR VLLTERKGKV
KLYNPKTGKV KLVAEVPVYT KQEYGLMGLN IDPNFKTNKL VYMYYSPPST AADTAQHLSR
FKYDDVKDTL LLSTEELMLT VPVKRTDCCH TGGSIAWDAK GNLYLSTGDD VNPFQSNGYG
PIDERPGREG WDGQHTSSNT NSLRGKVLRI KPRYGDRRAN MPGGTNLYDI PEGNLFPPGT
EKTRPEIYVM GTRNPYRISV DQHTGYLYWG DVGPDASNDD PKRGPRGYDE VNQARKAGYF
GYPLFIGNNR PYIDFNFADS TSGKPFDPLK PINNSPHNTG LQELPPAQPA FIYYPYADSP
EFGPIVGKGG RNAMAGPVYY SADFQDSKVK FPSYYNGKFF AYDWIRDYIN IVTMNEQGDL
QSIERFMPGT KFSHPIDMQF AKDGSLYTLE YGPNWFAQND EASLSHITFN AGNRVPVAIA
SATNTTGATP LKVNFSSKGS MDHDGDPIKY EWSFGKGLPK STVANPSYTY AKPGEYTATL
KVTDNAGNSN TSEVIVRVGN AIPKVDVAIK GNKTFYWNDM PVNYEVSVSD KEDGSLANKK
IPEDEVTLTI NYLEGFDKTQ LAQGHQANTG FETGKRMIEL SDCKACHSVD KKSIGPAYRE
VAKKYASERN SLKTLTDKIL KGGSGVWGEQ AMPGHPQHKP EEIEEMVKYI LDLNNTKAVD
KKPLKSSYVT QAKKKDGSYI FTASYTDRGN GTMGPLTGSK TVALRPSTLM ANMADTTRNT
FKYKGDNGNE MVIGMKDGGF IAFDDIDLTQ ITKLAVSVGS KAGQSAGGTL EVRLDGAAGA
KIGEGKVDKS ETISIPVKAP ADGKLHKVYF IFKNALAGSK PLFSIESIQF ENAVL