Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_5054 |
Symbol | |
ID | 8228661 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 6106349 |
End bp | 6109756 |
Gene Length | 3408 bp |
Protein Length | 1135 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644932902 |
Product | PKD domain containing protein |
Protein accession | YP_003089419 |
Protein GI | 255038798 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAAT CCCCTTTTCA AAAAGTATTA AAGCATTTCA GGATTGCCGG TGTGGCTGCC CTGGCCTGTT GCAGTCTGGC GGCAACTGCC CAGACGGTGA CGCCGGAGAA GCGCGTGCTG GTATTCTCGA AAACAGCCGG GTTCCGGCAT TCGTCTATCC CGGCAGGGAA AACTGCCATT TTAAAGCTGG GGAAAGAGAC CGGTTTTTCG GTGGATACTA CCGAGAACTC GGCTGTTTTT ACGAATAAAA ATCTGCAAAA ATACGCTGCG GTTGTATTCC TGAACACCAC CGGCAATGTG CTGAACGACA AGCAGCAGGA TGCATTTGAG CGATACATCC AGGCGGGCGG CGGCTACGTG GGCATCCACG CCGCAACCGA CACCGAATAC GAATGGCCGT GGTATAACAA ACTCGCCGGC GCGCAATTCC TGAGCCATCC TGGCAACCCG AATGTGCAGG AAGGCGAGGC ATTTGTTGTG AACGACCAGC ATCCTTCGAT GGATGGTTTT CCAAAAAAAT GGAAGATCAA GGATGAATTT TACGACTTCA AAAACTTCAA TGAAAAAGTA AATGTCCTCG TGAAGATCGA TGAAAAGACT TACAGGGACG GCAAAATGGG CGATAACCAC CCAATGTCGT GGTACCACGA ATTTGACGGT GGTCGTGCAT TCTACACCAA CTTCGGGCAC GAAGATGCGA CTTTCATCAA CCCTGTTTTT GTAAAACACC TGACCGGTGG ATTGAACTGG GCGATGGCTT CCAAGCTGGA TTATGCCAAA TCACGGCCGG AAGAGAACCG TTTTACCAAA AAAGTACTGG TTACCAAACT GGATGAGCCT ACTGAACTGG TAGTTCTGGA TGATCAGCGT GTACTTCTGA CTGAGCGCAA GGGAAAAGTA AAGCTTTACA ATCCCAAAAC CGGAAAGGTG AAACTGGTGG CCGAAGTACC CGTTTATACC AAGCAGGAAT ATGGCCTGAT GGGGCTGAAC ATCGACCCCA ACTTCAAGAC CAACAAGCTG GTATATATGT ATTATTCTCC CCCATCGACC GCGGCCGACA CTGCTCAGCA TTTGTCGCGC TTCAAATACG ATGATGTAAA GGATACATTG CTGCTCAGCA CCGAAGAGCT CATGCTCACC GTGCCCGTGA AGCGCACGGA TTGCTGCCAT ACCGGCGGAT CAATTGCCTG GGATGCGAAA GGTAATCTCT ACTTATCCAC CGGTGACGAC GTGAACCCGT TCCAATCAAA CGGTTATGGG CCGATCGACG AGCGTCCGGG ACGTGAAGGC TGGGATGGAC AGCATACTTC ATCGAACACT AATTCATTGA GAGGCAAAGT ATTGCGCATT AAACCGCGTT ACGGCGACCG TCGTGCGAAC ATGCCGGGCG GTACTAACCT ATACGATATT CCAGAGGGCA ACCTCTTCCC TCCCGGAACG GAAAAGACGC GTCCTGAAAT CTACGTGATG GGTACCCGCA ACCCTTACCG CATTTCGGTG GACCAGCACA CGGGCTATTT GTATTGGGGT GATGTGGGCC CGGATGCGTC CAACGACGAT CCGAAACGTG GTCCGAGAGG GTATGACGAG GTAAACCAGG CCCGGAAAGC GGGTTATTTC GGTTACCCTT TGTTCATTGG TAACAACCGT CCGTACATTG ATTTCAACTT CGCCGACAGC ACTTCCGGCA AGCCGTTTGA TCCATTGAAG CCGATCAACA ATTCGCCGCA CAACACCGGT TTGCAAGAAT TGCCGCCTGC GCAGCCCGCA TTCATCTATT ATCCTTATGC CGATTCTCCC GAGTTCGGCC CGATCGTAGG TAAAGGCGGA CGGAATGCAA TGGCCGGCCC GGTTTACTAT TCCGCTGACT TTCAGGACAG CAAGGTGAAG TTTCCTTCGT ATTACAATGG CAAGTTCTTC GCTTACGACT GGATTCGTGA TTACATCAAC ATCGTGACCA TGAACGAGCA AGGCGACCTG CAAAGCATCG AGCGCTTCAT GCCGGGCACG AAGTTCAGCC ATCCGATCGA CATGCAGTTT GCCAAAGACG GCTCATTATA TACATTGGAA TACGGCCCCA ACTGGTTTGC CCAAAACGAC GAAGCGAGCC TTTCGCATAT TACATTCAAC GCAGGAAACC GCGTTCCGGT GGCAATCGCA AGCGCAACCA ACACGACAGG CGCTACCCCA TTGAAAGTCA ATTTCTCTTC CAAAGGCTCC ATGGATCACG ACGGCGACCC GATTAAATAC GAATGGTCGT TTGGAAAAGG CCTGCCAAAA AGTACGGTTG CTAACCCAAG CTACACGTAC GCTAAGCCAG GCGAATACAC CGCCACTCTC AAAGTGACCG ATAATGCCGG TAATTCCAAC ACCTCTGAAG TGATCGTACG CGTCGGTAAC GCGATCCCGA AAGTGGATGT AGCGATCAAA GGCAACAAGA CATTCTACTG GAACGACATG CCTGTAAACT ACGAAGTATC CGTGTCGGAC AAGGAAGACG GTAGCCTGGC GAACAAGAAA ATTCCGGAAG ACGAAGTGAC TTTGACGATC AATTACCTTG AAGGATTTGA CAAAACGCAG CTCGCGCAAG GCCATCAGGC CAATACAGGC TTCGAAACCG GCAAGCGGAT GATCGAGCTG AGCGATTGCA AGGCATGCCA TTCGGTCGAC AAAAAGTCCA TCGGACCGGC TTATCGCGAA GTAGCGAAGA AATACGCCAG CGAGCGCAAT TCACTGAAAA CGCTCACAGA CAAAATCCTG AAAGGCGGAA GCGGCGTTTG GGGCGAGCAG GCAATGCCGG GTCACCCGCA GCACAAGCCG GAAGAGATCG AAGAAATGGT GAAGTACATC CTCGACCTCA ACAATACAAA AGCCGTTGAC AAAAAGCCGT TGAAAAGCTC ATACGTGACG CAGGCTAAAA AGAAAGACGG TTCGTACATC TTCACGGCCA GCTACACCGA CAGGGGCAAC GGCACAATGG GTCCATTAAC CGGCTCGAAA ACCGTTGCGC TCCGTCCATC CACATTAATG GCAAATATGG CGGATACCAC CAGAAACACC TTCAAATACA AAGGCGATAA TGGCAACGAA ATGGTGATTG GTATGAAAGA TGGCGGCTTC ATCGCCTTCG ACGACATCGA CCTCACCCAA ATCACGAAAC TGGCAGTTTC CGTGGGCAGT AAAGCCGGGC AATCGGCCGG TGGAACGCTG GAAGTGCGCC TCGACGGGGC GGCCGGTGCG AAAATCGGCG AAGGCAAGGT CGATAAGTCC GAAACAATCA GCATTCCTGT GAAAGCTCCT GCGGACGGTA AGTTGCATAA AGTGTATTTT ATATTTAAAA ATGCATTAGC TGGCAGCAAA CCGCTGTTTT CGATTGAATC GATTCAGTTT GAGAATGCCG TATTGTAA
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Protein sequence | MSESPFQKVL KHFRIAGVAA LACCSLAATA QTVTPEKRVL VFSKTAGFRH SSIPAGKTAI LKLGKETGFS VDTTENSAVF TNKNLQKYAA VVFLNTTGNV LNDKQQDAFE RYIQAGGGYV GIHAATDTEY EWPWYNKLAG AQFLSHPGNP NVQEGEAFVV NDQHPSMDGF PKKWKIKDEF YDFKNFNEKV NVLVKIDEKT YRDGKMGDNH PMSWYHEFDG GRAFYTNFGH EDATFINPVF VKHLTGGLNW AMASKLDYAK SRPEENRFTK KVLVTKLDEP TELVVLDDQR VLLTERKGKV KLYNPKTGKV KLVAEVPVYT KQEYGLMGLN IDPNFKTNKL VYMYYSPPST AADTAQHLSR FKYDDVKDTL LLSTEELMLT VPVKRTDCCH TGGSIAWDAK GNLYLSTGDD VNPFQSNGYG PIDERPGREG WDGQHTSSNT NSLRGKVLRI KPRYGDRRAN MPGGTNLYDI PEGNLFPPGT EKTRPEIYVM GTRNPYRISV DQHTGYLYWG DVGPDASNDD PKRGPRGYDE VNQARKAGYF GYPLFIGNNR PYIDFNFADS TSGKPFDPLK PINNSPHNTG LQELPPAQPA FIYYPYADSP EFGPIVGKGG RNAMAGPVYY SADFQDSKVK FPSYYNGKFF AYDWIRDYIN IVTMNEQGDL QSIERFMPGT KFSHPIDMQF AKDGSLYTLE YGPNWFAQND EASLSHITFN AGNRVPVAIA SATNTTGATP LKVNFSSKGS MDHDGDPIKY EWSFGKGLPK STVANPSYTY AKPGEYTATL KVTDNAGNSN TSEVIVRVGN AIPKVDVAIK GNKTFYWNDM PVNYEVSVSD KEDGSLANKK IPEDEVTLTI NYLEGFDKTQ LAQGHQANTG FETGKRMIEL SDCKACHSVD KKSIGPAYRE VAKKYASERN SLKTLTDKIL KGGSGVWGEQ AMPGHPQHKP EEIEEMVKYI LDLNNTKAVD KKPLKSSYVT QAKKKDGSYI FTASYTDRGN GTMGPLTGSK TVALRPSTLM ANMADTTRNT FKYKGDNGNE MVIGMKDGGF IAFDDIDLTQ ITKLAVSVGS KAGQSAGGTL EVRLDGAAGA KIGEGKVDKS ETISIPVKAP ADGKLHKVYF IFKNALAGSK PLFSIESIQF ENAVL
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